RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1102048" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29404517 29404517 PRJNA1102048_P_NODE_1889_length_585_cov_1.328125_g1788_i0 PRJNA1102048 1889 585 1.328125 7.76953125 Haloarculaceae archaeon 2497615 Archaea Archaea 90.5 6.43e-18   NR MFB6074683.1 2497615 g1788 i0 32.3 2.61025641025641 167 107 83.6 5 540 52 43 207 MFB6074683.1 DUF4397 domain-containing protein [Haloarculaceae archaeon] diamond 1527 90.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae   Haloarculaceae archaeon
29941459 29941459 PRJNA1102048_P_NODE_11111_length_266_cov_1.435233_g11007_i0 PRJNA1102048 11111 266 1.435233 3.81771978 Candidatus Methanophaga sp. ANME-1 ERB7 2759913 Archaea Archaea 57.8 7.7e-8   NR QNO56085.1 2759913 g11007 i0 32.9 0.823308270676692 73 49 82.3 0 225 7 15 87 QNO56085.1 hypothetical protein GIJIEOGM_00026 [Candidatus Methanophaga sp. ANME-1 ERB7] diamond 219 57.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophaga Candidatus Methanophaga sp. ANME-1 ERB7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;