RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1102048" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29719957 29719957 PRJNA1102048_P_NODE_1230_length_681_cov_2.444079_g1132_i0 PRJNA1102048 1230 681 2.444079 16.64417799 Sulfurimonas sp. 2022749 Bacteria Bacteria 105 2.5600000000000003e-22   NR MDD2789235.1 2022749 g1132 i0 40.5 0.674008810572687 153 84 64.3 4 664 227 258 410 MDD2789235.1 hypothetical protein [Sulfurimonas sp.] diamond 459 105 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp.
31363404 31363404 PRJNA1102048_P_NODE_10496_length_273_cov_1.020000_g10392_i0 PRJNA1102048 10496 273 1.02 2.7846 Campylobacterota bacterium 2026809 Bacteria Bacteria 64.3 9.78e-10   NR MCL4431196.1 2026809 g10392 i0 44.7 0.835164835164835 76 41 83.5 1 44 271 2 76 MCL4431196.1 hypothetical protein [Campylobacterota bacterium] diamond 228 64.3 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;