RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1101946" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101946 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28457389 28457389 PRJNA1101946_S_NODE_8606_length_262_cov_1.676056_g8507_i0 PRJNA1101946 8606 262 1.676056 4.39126672 Methanobacteriota archaeon 2026739 Archaea Archaea 42.7 0.0435   NR MAZ42556.1 2026739 g8507 i0 38 0.812977099236641 71 37 73.3 3 3 194 79 149 MAZ42556.1 hypothetical protein [Methanobacteriota archaeon] diamond 213 42.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31869243 31869243 PRJNA1101946_S_NODE_10317_length_244_cov_294.964103_g10218_i0 PRJNA1101946 10317 244 294.964103 719.71241132 Candidatus Lutacidiplasma silvani 3345208 Archaea Archaea 45.4 0.00436   NR MCI4327387.1 3345208 g10218 i0 36.7 0.737704918032787 60 38 73.8 0 62 241 533 592 MCI4327387.1 PKD domain-containing protein [Candidatus Lutacidiplasma silvani] diamond 180 45.4 1 Archaea   Methanobacteriati Thermoplasmatota   Candidatus Lutacidiplasmatales   Candidatus Lutacidiplasma Candidatus Lutacidiplasma silvani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;