RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1101946" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1101946 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29679640 29679640 PRJNA1101946_S_NODE_17230_length_194_cov_2.462069_g17131_i0 PRJNA1101946 17230 194 2.462069 4.77641386 Pseudomonadati 3379134 Bacteria Bacteria 40.4 0.0466   NR MST95371.1 2024890 g17131 i0 31.5 1.63917525773196 54 37 83.5 0 170 9 51 104 MST95371.1 hypothetical protein [Pedosphaera sp.] diamond 318 40.8 0.990196078431373 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
31742670 31742670 PRJNA1101946_S_NODE_12917_length_223_cov_2.103448_g12818_i0 PRJNA1101946 12917 223 2.103448 4.69068904 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.5 0.0139   NR MEM6334289.1 2026780 g12818 i0 39.7 1.82959641255605 73 38 98.2 1 1 219 30 96 MEM6334289.1 ABC transporter ATP-binding protein [Planctomycetota bacterium] diamond 408 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32407283 32407283 PRJNA1101946_S_NODE_20459_length_178_cov_2.217054_g20360_i0 PRJNA1101946 20459 178 2.217054 3.94635612 Planctomycetota bacterium 2026780 Bacteria Bacteria 39.3 0.0498   NR MFM7807469.1 2026780 g20360 i0 39.5 0.72471910112359506 43 26 72.5 0 144 16 20 62 MFM7807469.1 chemotaxis protein CheB [Planctomycetota bacterium] diamond 129 39.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;