RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1101048" and tax_phylum = "Bacteroidota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101048 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27794350 27794350 PRJNA1101048_P_NODE_5024_length_287_cov_2.925234_g4968_i0 PRJNA1101048 5024 287 2.925234 8.39542158 Hymenobacter monticola 1705399 Bacteria Bacteria 48.5 5.71e-4   NR WP_317244101.1 1705399 g4968 i0 39 0.857142857142857 82 46 82.6 2 8 244 77 157 WP_317244101.1 OmpA family protein [Hymenobacter monticola] diamond 246 48.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter monticola
28362412 28362412 PRJNA1101048_P_NODE_8286_length_247_cov_0.896552_g8230_i0 PRJNA1101048 8286 247 0.896552 2.21448344 Flavobacteriales bacterium 2021391 Bacteria Bacteria 42 0.0258   NR HRO99885.1 2021391 g8230 i0 40.4 0.57085020242915 47 26 57.1 1 101 241 68 112 HRO99885.1 hypothetical protein [Flavobacteriales bacterium] diamond 141 42 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales     Flavobacteriales bacterium
29878236 29878236 PRJNA1101048_P_NODE_4931_length_289_cov_2.046296_g4875_i0 PRJNA1101048 4931 289 2.046296 5.91379544 Aureitalea sp. L 1872661 Bacteria Bacteria 45.4 0.0071   NR WP_265198814.1 2816962 g4875 i0 40.4 0.539792387543253 52 31 54 0 90 245 252 303 WP_265198814.1 hybrid sensor histidine kinase/response regulator [Aureitalea sp. L0-47] diamond 156 45.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aureitalea Aureitalea sp. L0-47

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;