RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1101048" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101048 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15513862 15513862 PRJNA1101048_P_NODE_9713_length_223_cov_4.933333_g9657_i0 PRJNA1101048 9713 223 4.933333 11.00133259 Peptococcaceae bacterium CEB3 999898 Bacteria Bacteria 70.1 2.99e-13   NR KLU63339.1 999898 g9657 i0 56.7 3.51121076233184 67 29 90.1 0 201 1 21 87 KLU63339.1 hypothetical protein CEB3_c02620 [Peptococcaceae bacterium CEB3] diamond 783 70.1 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae   Peptococcaceae bacterium CEB3
28520491 28520491 PRJNA1101048_P_NODE_5347_length_281_cov_0.783654_g5291_i0 PRJNA1101048 5347 281 0.783654 2.20206774 Clostridia bacterium 2044939 Bacteria Bacteria 43.5 0.0288   NR MBR5922358.1 2044939 g5291 i0 34.7 0.800711743772242 75 45 75.8 1 260 48 36 110 MBR5922358.1 hypothetical protein [Clostridia bacterium] diamond 225 43.5 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
32344176 32344176 PRJNA1101048_P_NODE_5679_length_274_cov_1.527363_g5623_i0 PRJNA1101048 5679 274 1.527363 4.18497462 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 45.8 0.00432   NR MBQ9839032.1 2485925 g5623 i0 42.6 0.591240875912409 54 30 59.1 1 48 209 344 396 MBQ9839032.1 DUF2079 domain-containing protein [Oscillospiraceae bacterium] diamond 162 45.8 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
32533961 32533961 PRJNA1101048_P_NODE_4079_length_310_cov_1.050633_g4023_i0 PRJNA1101048 4079 310 1.050633 3.2569623 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 43.1 0.0467   NR MDR3310048.1 2485925 g4023 i0 41.7 0.464516129032258 48 25 43.5 1 144 10 127 174 MDR3310048.1 glycerol-3-phosphate 1-O-acyltransferase PlsY [Oscillospiraceae bacterium] diamond 144 43.1 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;