RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1101048" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101048 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30722355 30722355 PRJNA1101048_P_NODE_9094_length_243_cov_0.917647_g9038_i0 PRJNA1101048 9094 243 0.917647 2.22988221 Symbiodinium 2949 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0386   NR CAE7886537.1 2951 g9038 i0 38.8 1.81481481481481 49 24 60.5 1 4 150 743 785 CAE7886537.1 unnamed protein product [Symbiodinium microadriaticum] diamond 441 42.7 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum
31869242 31869242 PRJNA1101048_P_NODE_9157_length_243_cov_0.917647_g9101_i0 PRJNA1101048 9157 243 0.917647 2.22988221 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.33e-9   NR KAF0709168.1 112090 g9101 i0 49.1 0.654320987654321 53 26 65.4 1 243 85 172 223 KAF0709168.1 hypothetical protein AaE_012954 [Aphanomyces astaci] diamond 159 62.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32808598 32808598 PRJNA1101048_P_NODE_7820_length_249_cov_0.886364_g7764_i0 PRJNA1101048 7820 249 0.886364 2.20704636 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0425   NR GFE53323.1 5869 g7764 i0 40.4 1.13253012048193 47 23 50.6 1 73 198 1233 1279 GFE53323.1 SNF2 family N-terminal domain containing protein [Babesia ovis] diamond 282 42.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;