RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1098727" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1098727 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29057259 29057259 PRJNA1098727_P_NODE_13708_length_167_cov_0.881356_g13467_i0 PRJNA1098727 13708 167 0.881356 1.47186452 Nitrospira sp. CR1.2 2656757 Bacteria Bacteria 117 9.28e-29   NR MBA5875532.1 2656757 g13467 i0 98.2 4.94011976047904 55 1 98.8 0 167 3 268 322 MBA5875532.1 hypothetical protein [Nitrospira sp. CR1.2] diamond 825 117 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CR1.2
29499109 29499109 PRJNA1098727_P_NODE_15770_length_162_cov_0.920354_g15529_i0 PRJNA1098727 15770 162 0.920354 1.49097348 Nitrospira sp. 70125 Bacteria Bacteria 65.9 8.64e-11   NR TKS63325.1 70125 g15529 i0 60.4 0.981481481481482 53 21 98.1 0 4 162 219 271 TKS63325.1 MAG: hypothetical protein EWM73_01594 [Nitrospira sp.] diamond 159 65.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;