RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1097627" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1097627 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27510137 27510137 PRJNA1097627_P_NODE_194343_length_242_cov_0.911243_g194050_i0 PRJNA1097627 194343 242 0.911243 2.20520806 Deinococcus yunweiensis 367282 Bacteria Bacteria 97.4 2.13e-21   NR WP_412028724.1 367282 g194050 i0 67.1 0.979338842975207 79 26 97.9 0 238 2 317 395 WP_412028724.1 bifunctional RecB family nuclease/DEAD/DEAH box helicase [Deinococcus yunweiensis] diamond 237 97.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
28646797 28646797 PRJNA1097627_P_NODE_174087_length_245_cov_1.662791_g173794_i0 PRJNA1097627 174087 245 1.662791 4.07383795 Deinococcus aquatilis 519440 Bacteria Bacteria 137 1.08e-35   NR WP_019008594.1 519440 g173794 i0 90 0.979591836734694 80 8 98 0 240 1 583 662 WP_019008594.1 hypothetical protein [Deinococcus aquatilis] diamond 240 137 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aquatilis
30667932 30667932 PRJNA1097627_P_NODE_181773_length_244_cov_0.900585_g181480_i0 PRJNA1097627 181773 244 0.900585 2.1974274 Deinococcus aerius 200253 Bacteria Bacteria 64.3 9.69e-10   NR WP_103131122.1 200253 g181480 i0 75.6 0.504098360655738 41 10 50.4 0 2 124 540 580 WP_103131122.1 S8 family serine peptidase [Deinococcus aerius] diamond 123 64.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aerius
32817290 32817290 PRJNA1097627_P_NODE_93000_length_278_cov_1.453659_g92707_i0 PRJNA1097627 93000 278 1.453659 4.04117202 Deinococcus soli (ex Cha et al. 2 1309411 Bacteria Bacteria 108 2.57e-25   NR WP_188845403.1 1309411 g92707 i0 53.3 0.992805755395683 92 43 99.3 0 1 276 109 200 WP_188845403.1 hypothetical protein [Deinococcus soli (ex Cha et al. 2016)] diamond 276 108 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;