RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1095825" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1095825 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27762880 27762880 PRJNA1095825_P_NODE_4504_length_2852_cov_7.066931_g3584_i0 PRJNA1095825 4504 2852 7.066931 201.54887212 Powellomyces hirtus 109895 Fungi Fungi 64.7 1.38e-6   NR QCQ69130.1 109895 g3584 i0 35.9 0.108345021037868 103 62 10.6 3 1214 912 277 377 QCQ69130.1 RNA-dependent DNA polymerase [Powellomyces hirtus] diamond 309 64.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces hirtus
29593488 29593488 PRJNA1095825_P_NODE_240770_length_250_cov_1.740113_g237707_i0 PRJNA1095825 240770 250 1.740113 4.3502825 Lobulomyces angularis 109889 Fungi Fungi 42.7 0.0407   NR KAJ3387467.1 109889 g237707 i0 39.4 0.792 66 33 72 3 225 46 420 484 KAJ3387467.1 hypothetical protein HDU92_001936 [Lobulomyces angularis] diamond 198 42.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis
31078848 31078848 PRJNA1095825_P_NODE_70015_length_452_cov_3.472296_g66952_i0 PRJNA1095825 70015 452 3.472296 15.69477792 Chytridium lagenaria 64509 Fungi Fungi 135 9.75e-38   NR KAI8853126.1 64509 g66952 i0 47.8 1.67920353982301 136 70 90.3 1 29 436 5 139 KAI8853126.1 40S ribosomal protein S19-A [Chytridium lagenaria] diamond 759 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;