RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1095825" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1095825 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6578857 6578857 PRJNA1095825_P_NODE_262146_length_247_cov_0.885057_g259083_i0 PRJNA1095825 262146 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 126 2.18e-33   NR PYM36802.1 2053607 g259083 i0 84.4 14.0161943319838 77 12 93.5 0 233 3 79 155 PYM36802.1 MAG: ABC transporter permease [Candidatus Rokuibacteriota bacterium] diamond 3462 126 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
15503437 15503437 PRJNA1095825_P_NODE_248053_length_249_cov_0.875000_g244990_i0 PRJNA1095825 248053 249 0.875 2.17875 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 154 5.78e-44   NR MBM4442021.1 2053607 g244990 i0 97.6 3.95180722891566 82 2 98.8 0 3 248 135 216 MBM4442021.1 ATP-binding cassette domain-containing protein [Candidatus Rokuibacteriota bacterium] diamond 984 154 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
28930899 28930899 PRJNA1095825_P_NODE_212708_length_267_cov_1.922680_g209645_i0 PRJNA1095825 212708 267 1.92268 5.1335556 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 161 6.94e-48   NR PYO46541.1 2053607 g209645 i0 93.2 0.98876404494382 88 6 98.9 0 3 266 87 174 PYO46541.1 MAG: acyl-CoA dehydrogenase, partial [Candidatus Rokuibacteriota bacterium] diamond 264 161 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
30794231 30794231 PRJNA1095825_P_NODE_273954_length_245_cov_0.895349_g270891_i0 PRJNA1095825 273954 245 0.895349 2.19360505 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 117 4.01e-31   NR PYO51710.1 2053607 g270891 i0 83.3 0.808163265306122 66 11 80.8 0 244 47 99 164 PYO51710.1 MAG: hypothetical protein DMD83_27185 [Candidatus Rokuibacteriota bacterium] diamond 198 117 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
32027537 32027537 PRJNA1095825_P_NODE_242158_length_250_cov_0.870056_g239095_i0 PRJNA1095825 242158 250 0.870056 2.17514 Candidatus Rokubacteria bacterium RIFCSPHIGHO2_ 1802102 Bacteria Bacteria 135 6.02e-36   NR OGK98239.1 1802102 g239095 i0 81.9 1.992 83 15 99.6 0 250 2 170 252 OGK98239.1 MAG: hypothetical protein A3D33_02445 [Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26] diamond 498 135 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26
32817255 32817255 PRJNA1095825_P_NODE_194540_length_280_cov_1.748792_g191477_i0 PRJNA1095825 194540 280 1.748792 4.8966176 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 175 6.049999999999999e-54   NR MET0850896.1 2053607 g191477 i0 95.7 0.996428571428571 93 4 99.6 0 1 279 70 162 MET0850896.1 rod shape-determining protein MreD [Candidatus Rokuibacteriota bacterium] diamond 279 175 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;