RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1095825" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1095825 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4027121 4027121 PRJNA1095825_P_NODE_221184_length_261_cov_1.638298_g218121_i0 PRJNA1095825 221184 261 1.638298 4.27595778 Trebouxia sp. C 2796353 Plants Plants 74.3 6.74e-15   NR KAL0042167.1 2905653 g218121 i0 54 1.47126436781609 63 28 71.3 1 4 189 3 65 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 384 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
6577654 6577654 PRJNA1095825_P_NODE_133066_length_335_cov_1.175573_g130003_i0 PRJNA1095825 133066 335 1.175573 3.93816955 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 135 4.529999999999999e-37   NR KAF6263477.1 2650976 g130003 i0 69.5 3.40298507462687 95 29 85.1 0 328 44 143 237 KAF6263477.1 60S ribosomal protein L7 [Scenedesmus sp. NREL 46B-D3] diamond 1140 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
27794333 27794333 PRJNA1095825_P_NODE_294104_length_241_cov_0.916667_g291041_i0 PRJNA1095825 294104 241 0.916667 2.20916747 Monoraphidium neglectum 145388 Plants Plants 68.2 3.18e-11   NR XP_013901161.1 145388 g291041 i0 60.7 0.697095435684647 56 21 68.5 1 240 76 275 330 XP_013901161.1 hypothetical protein MNEG_5819 [Monoraphidium neglectum] diamond 168 68.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
29088782 29088782 PRJNA1095825_P_NODE_219988_length_262_cov_1.629630_g216925_i0 PRJNA1095825 219988 262 1.62963 4.2696306 Edaphochlamys debaryana 47281 Plants Plants 90.5 3.21e-19   NR KAG2485171.1 47281 g216925 i0 64.6 0.744274809160305 65 23 74.4 0 260 66 299 363 KAG2485171.1 hypothetical protein HYH03_016061 [Edaphochlamys debaryana] diamond 195 90.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
29688303 29688303 PRJNA1095825_P_NODE_237630_length_251_cov_0.865169_g234567_i0 PRJNA1095825 237630 251 0.865169 2.17157419 Chlorella variabilis 554065 Plants Plants 72.4 1.48e-12   NR XP_005845855.1 554065 g234567 i0 56.7 1.74501992031873 60 21 71.7 1 186 7 330 384 XP_005845855.1 hypothetical protein CHLNCDRAFT_136360 [Chlorella variabilis] diamond 438 72.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
31141512 31141512 PRJNA1095825_P_NODE_295575_length_241_cov_0.916667_g292512_i0 PRJNA1095825 295575 241 0.916667 2.20916747 Haematococcus lacustris 44745 Plants Plants 100 4.12e-23   NR KAJ9515751.1 44745 g292512 i0 56.6 2.90041493775934 76 33 94.6 0 229 2 227 302 KAJ9515751.1 hypothetical protein QJQ45_008633 [Haematococcus lacustris] diamond 699 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;