RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1095825" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1095825 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27058973 27058973 PRJNA1095825_P_NODE_271462_length_245_cov_0.895349_g268399_i0 PRJNA1095825 271462 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 1.74e-19   NR KAF2069315.1 133409 g268399 i0 56.3 4.83673469387755 80 35 98 0 242 3 366 445 KAF2069315.1 hypothetical protein CYY_009368 [Polysphondylium violaceum] diamond 1185 92.4 0.995670995670996 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27447108 27447108 PRJNA1095825_P_NODE_250263_length_249_cov_0.875000_g247200_i0 PRJNA1095825 250263 249 0.875 2.17875 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 66.2 1.59e-10   NR KAH3767016.1 1580589 g247200 i0 54.7 0.63855421686747 53 24 63.9 0 11 169 240 292 KAH3767016.1 inorganic pyrophosphatase, mitochondrial [Pelomyxa schiedti] diamond 159 66.2 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29499086 29499086 PRJNA1095825_P_NODE_216110_length_265_cov_1.250000_g213047_i0 PRJNA1095825 216110 265 1.25 3.3125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 44.3 0.0139   NR XP_004352093.1 1257118 g213047 i0 45.9 0.418867924528302 37 20 41.9 0 191 81 237 273 XP_004352093.1 peptidase, S8/S53 subfamily protein [Acanthamoeba castellanii str. Neff] diamond 111 44.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30690793 30690793 PRJNA1095825_P_NODE_190733_length_283_cov_1.466667_g187670_i0 PRJNA1095825 190733 283 1.466667 4.15066761 Eumycetozoa 142796 Evosea other_Eukaryota 108 5.6999999999999995e-25   NR XP_638501.1 352472 g187670 i0 51.1 1.92932862190813 92 45 97.5 0 281 6 586 677 XP_638501.1 glycyl-tRNA synthetase [Dictyostelium discoideum AX4] diamond 546 109 0.990825688073395 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
32027535 32027535 PRJNA1095825_P_NODE_238958_length_251_cov_0.865169_g235895_i0 PRJNA1095825 238958 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.5 6.29e-6   NR XP_004338083.1 1257118 g235895 i0 36.8 0.908366533864542 76 48 90.8 0 250 23 130 205 XP_004338083.1 cytidyltransferaserelated domain containing protein [Acanthamoeba castellanii str. Neff] diamond 228 53.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;