RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1093380" and tax_phylum = "Nemertea"

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tax_superkingdom 1

tax_phylum 1

  • Nemertea · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1093380 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27375400 27375400 PRJNA1093380_P_NODE_16883_length_241_cov_0.916667_g16777_i0 PRJNA1093380 16883 241 0.916667 2.20916747 Metazoa 33208 Nemertea other_Eukaryota 108 2.05e-25   NR XP_064645196.1 88925 g16777 i0 72.4 3.83402489626556 76 21 94.6 0 241 14 364 439 XP_064645196.1 U4/U6 small nuclear ribonucleoprotein Prp31-like [Lineus longissimus] diamond 924 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;