RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA1093380" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1093380 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
199222 199222 PRJNA1093380_P_NODE_7701_length_275_cov_1.242574_g7595_i0 PRJNA1093380 7701 275 1.242574 3.4170785 Polyangia bacterium 3058050 Bacteria Bacteria 169 9.66e-50   NR HMF39611.1 3058050 g7595 i0 94.5 3.97090909090909 91 5 99.3 0 275 3 223 313 HMF39611.1 efflux RND transporter permease subunit [Polyangia bacterium] diamond 1092 169 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
7851955 7851955 PRJNA1093380_P_NODE_7887_length_274_cov_1.318408_g7781_i0 PRJNA1093380 7887 274 1.318408 3.61243792 Bacteria 2 Bacteria Bacteria 154 3.8e-41   NR MBS2025799.1 2026735 g7781 i0 90.9 11.5620437956204 88 8 96.4 0 9 272 629 716 MBS2025799.1 DNA mismatch repair protein MutS [Deltaproteobacteria bacterium] diamond 3168 155 0.993548387096774 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
14227889 14227889 PRJNA1093380_P_NODE_4292_length_308_cov_3.025532_g4186_i0 PRJNA1093380 4292 308 3.025532 9.31863856 Myxococcales bacterium 2026763 Bacteria Bacteria 121 1.53e-29   NR MES1175232.1 2026763 g4186 i0 69.3 0.983766233766234 101 31 98.4 0 3 305 359 459 MES1175232.1 ATP-binding protein [Myxococcales bacterium] diamond 303 121 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
15501859 15501859 PRJNA1093380_P_NODE_4973_length_292_cov_1.981735_g4867_i0 PRJNA1093380 4973 292 1.981735 5.7866662 Myxococcaceae bacterium 2484252 Bacteria Bacteria 136 7.61e-38   NR MDB4998178.1 2484252 g4867 i0 71.9 0.986301369863014 96 27 98.6 0 1 288 121 216 MDB4998178.1 Ribulose-phosphate 3-epimerase [Myxococcaceae bacterium] diamond 288 136 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
20145550 20145550 PRJNA1093380_P_NODE_10116_length_261_cov_1.638298_g10010_i0 PRJNA1093380 10116 261 1.638298 4.27595778 Myxococcaceae bacterium 2484252 Bacteria Bacteria 159 4.47e-45   NR RYZ13579.1 2484252 g10010 i0 86.2 1 87 12 100 0 1 261 242 328 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 261 159 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
20145605 20145605 PRJNA1093380_P_NODE_3956_length_313_cov_1.283333_g3850_i0 PRJNA1093380 3956 313 1.283333 4.01683229 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 155 2.1799999999999996e-41   NR MCC7537080.1 2026735 g3850 i0 77.5 1.94568690095847 102 23 97.8 0 308 3 521 622 MCC7537080.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 609 155 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27027284 27027284 PRJNA1093380_P_NODE_8582_length_270_cov_1.543147_g8476_i0 PRJNA1093380 8582 270 1.543147 4.1664969 Pseudomonadati 3379134 Bacteria Bacteria 75.9 7.6e-15   NR MBK7584357.1 2026763 g8476 i0 63.2 3.04444444444444 57 21 63.3 0 268 98 117 173 MBK7584357.1 GAF domain-containing protein [Myxococcales bacterium] diamond 822 76.3 0.99475753604194 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27383769 27383769 PRJNA1093380_P_NODE_16903_length_241_cov_0.916667_g16797_i0 PRJNA1093380 16903 241 0.916667 2.20916747 Polyangiales bacterium 3034171 Bacteria Bacteria 77.8 1.42e-14   NR MFI5300477.1 3034171 g16797 i0 59.2 1.80497925311203 71 27 87.1 2 2 211 346 415 MFI5300477.1 hypothetical protein [Polyangiales bacterium] diamond 435 77.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27415514 27415514 PRJNA1093380_P_NODE_13143_length_249_cov_0.875000_g13037_i0 PRJNA1093380 13143 249 0.875 2.17875 Polyangiales bacterium 3034171 Bacteria Bacteria 130 2.42e-33   NR MEO7097594.1 3034171 g13037 i0 75.6 1.97590361445783 82 20 98.8 0 248 3 466 547 MEO7097594.1 TIGR03960 family B12-binding radical SAM protein [Polyangiales bacterium] diamond 492 130 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27469896 27469896 PRJNA1093380_P_NODE_11383_length_253_cov_2.444444_g11277_i0 PRJNA1093380 11383 253 2.444444 6.18444332 Myxococcia 32015 Bacteria Bacteria 43.1 0.03   NR HBQ17095.1 2026763 g11277 i0 33.3 1.49407114624506 63 42 74.7 0 35 223 127 189 HBQ17095.1 hypothetical protein [Myxococcales bacterium] diamond 378 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27541633 27541633 PRJNA1093380_P_NODE_9124_length_267_cov_1.479381_g9018_i0 PRJNA1093380 9124 267 1.479381 3.94994727 Polyangiaceae bacterium 2268199 Bacteria Bacteria 154 6.54e-46   NR HMR08988.1 2268199 g9018 i0 95.5 3.95505617977528 88 4 98.9 0 2 265 9 96 HMR08988.1 DUF4400 domain-containing protein [Polyangiaceae bacterium] diamond 1056 154 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27762851 27762851 PRJNA1093380_P_NODE_18024_length_211_cov_4.427536_g17918_i0 PRJNA1093380 18024 211 4.427536 9.34210096 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 69.7 7.84e-12   NR MBI2391367.1 2026735 g17918 i0 60.9 0.909952606635071 64 25 91 0 196 5 709 772 MBI2391367.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 192 69.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28046700 28046700 PRJNA1093380_P_NODE_15705_length_244_cov_0.900585_g15599_i0 PRJNA1093380 15705 244 0.900585 2.1974274 Polyangiaceae bacterium 2268199 Bacteria Bacteria 123 2.22e-33   NR HEY1959156.1 2268199 g15599 i0 72.5 0.983606557377049 80 21 98.4 1 244 5 96 174 HEY1959156.1 hypothetical protein [Polyangiaceae bacterium] diamond 240 123 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28046705 28046705 PRJNA1093380_P_NODE_4745_length_296_cov_3.040359_g4639_i0 PRJNA1093380 4745 296 3.040359 8.99946264 Polyangiaceae bacterium 2268199 Bacteria Bacteria 67.8 1.1e-10   NR HEX3345484.1 2268199 g4639 i0 76.1 5.72635135135135 46 11 46.6 0 140 3 219 264 HEX3345484.1 hypothetical protein [Polyangiaceae bacterium] diamond 1695 67.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28204419 28204419 PRJNA1093380_P_NODE_13266_length_248_cov_2.331429_g13160_i0 PRJNA1093380 13266 248 2.331429 5.78194392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.1 1.26e-8   NR MBI2392827.1 2026735 g13160 i0 39.7 0.943548387096774 78 46 93.1 1 237 7 51 128 MBI2392827.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 234 60.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28741364 28741364 PRJNA1093380_P_NODE_14887_length_245_cov_1.383721_g14781_i0 PRJNA1093380 14887 245 1.383721 3.39011645 Kofleriaceae bacterium 2212474 Bacteria Bacteria 49.3 1.79e-4   NR HEY4056217.1 2212474 g14781 i0 55.8 0.636734693877551 52 20 62.4 2 92 244 2 51 HEY4056217.1 hypothetical protein [Kofleriaceae bacterium] diamond 156 49.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28899055 28899055 PRJNA1093380_P_NODE_4648_length_298_cov_3.991111_g4542_i0 PRJNA1093380 4648 298 3.991111 11.89351078 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 137 1.51e-35   NR HTP50823.1 2510643 g4542 i0 67.3 1.96308724832215 98 30 98.7 1 1 294 202 297 HTP50823.1 M28 family peptidase [Anaeromyxobacteraceae bacterium] diamond 585 137 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29309637 29309637 PRJNA1093380_P_NODE_2949_length_349_cov_2.554348_g2843_i0 PRJNA1093380 2949 349 2.554348 8.91467452 Polyangia bacterium 3058050 Bacteria Bacteria 123 8.179999999999999e-31   NR HZS42091.1 3058050 g2843 i0 72.2 1.41833810888252 79 22 67.9 0 239 3 57 135 HZS42091.1 glycoside hydrolase family 18 protein [Polyangia bacterium] diamond 495 123 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
29624962 29624962 PRJNA1093380_P_NODE_7990_length_273_cov_1.715000_g7884_i0 PRJNA1093380 7990 273 1.715 4.68195 Kofleriaceae bacterium 2212474 Bacteria Bacteria 52 2.73e-5   NR HEX7837548.1 2212474 g7884 i0 36.1 3.21978021978022 97 42 98.9 3 272 3 121 204 HEX7837548.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Kofleriaceae bacterium] diamond 879 52 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29909806 29909806 PRJNA1093380_P_NODE_2051_length_399_cov_1.417178_g1945_i0 PRJNA1093380 2051 399 1.417178 5.65454022 Myxococcales bacterium 2026763 Bacteria Bacteria 103 1.13e-23   NR MCA9677810.1 2026763 g1945 i0 47.7 0.834586466165414 111 55 81.2 1 329 6 51 161 MCA9677810.1 zinc metalloprotease [Myxococcales bacterium] diamond 333 103 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30004508 30004508 PRJNA1093380_P_NODE_10471_length_259_cov_1.655914_g10365_i0 PRJNA1093380 10471 259 1.655914 4.28881726 Labilithrix sp. 1971228 Bacteria Bacteria 56.6 5.71e-7   NR MDF2692381.1 1971228 g10365 i0 72.5 1.38996138996139 40 11 46.3 0 138 257 1 40 MDF2692381.1 Serine/threonine protein kinase PrkC, regulator of stationary phase [Labilithrix sp.] diamond 360 56.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
30067545 30067545 PRJNA1093380_P_NODE_7632_length_275_cov_1.524752_g7526_i0 PRJNA1093380 7632 275 1.524752 4.193068 Polyangiaceae bacterium 2268199 Bacteria Bacteria 101 1.49e-22   NR HEY1955453.1 2268199 g7526 i0 67.4 2.82545454545455 89 28 97.1 1 8 274 319 406 HEY1955453.1 AAA family ATPase [Polyangiaceae bacterium] diamond 777 101 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30067546 30067546 PRJNA1093380_P_NODE_9892_length_262_cov_2.798942_g9786_i0 PRJNA1093380 9892 262 2.798942 7.33322804 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 136 3.1899999999999996e-35   NR MCZ7681777.1 2510337 g9786 i0 74.4 0.984732824427481 86 22 98.5 0 262 5 216 301 MCZ7681777.1 tetratricopeptide repeat-containing serine/threonine-protein kinase [Sandaracinaceae bacterium] diamond 258 136 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
30162160 30162160 PRJNA1093380_P_NODE_6512_length_282_cov_1.473684_g6406_i0 PRJNA1093380 6512 282 1.473684 4.15578888 Polyangiaceae bacterium 2268199 Bacteria Bacteria 72 3.01e-12   NR HLV21171.1 2268199 g6406 i0 59.6 1.5531914893617 52 19 53.2 1 2 151 566 617 HLV21171.1 cellulose binding domain-containing protein [Polyangiaceae bacterium] diamond 438 72 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30289154 30289154 PRJNA1093380_P_NODE_6632_length_281_cov_2.024038_g6526_i0 PRJNA1093380 6632 281 2.024038 5.68754678 Myxococcaceae bacterium 2484252 Bacteria Bacteria 91.3 3.97e-19   NR TAK32432.1 2484252 g6526 i0 54.3 0.98220640569395 92 41 97.2 1 1 273 252 343 TAK32432.1 MAG: hypothetical protein EPO40_02615 [Myxococcaceae bacterium] diamond 276 91.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30857421 30857421 PRJNA1093380_P_NODE_9814_length_263_cov_1.621053_g9708_i0 PRJNA1093380 9814 263 1.621053 4.26336939 Myxococcales bacterium 2026763 Bacteria Bacteria 111 2.99e-26   NR MBL8722228.1 2026763 g9708 i0 63.7 4.00380228136882 91 28 98.1 1 2 259 168 258 MBL8722228.1 IgGFc-binding protein [Myxococcales bacterium] diamond 1053 111 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30920866 30920866 PRJNA1093380_P_NODE_11934_length_251_cov_0.865169_g11828_i0 PRJNA1093380 11934 251 0.865169 2.17157419 Myxococcaceae bacterium 2484252 Bacteria Bacteria 70.1 6.18e-12   NR MDB4993079.1 2484252 g11828 i0 55.4 0.776892430278884 65 29 77.7 0 57 251 71 135 MDB4993079.1 hypothetical protein [Myxococcaceae bacterium] diamond 195 70.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
31047366 31047366 PRJNA1093380_P_NODE_9935_length_262_cov_1.687831_g9829_i0 PRJNA1093380 9935 262 1.687831 4.42211722 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.1 0.0341   NR NQW64191.1 2026735 g9829 i0 31.9 0.824427480916031 72 45 77.9 1 49 252 343 414 NQW64191.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32154079 32154079 PRJNA1093380_P_NODE_13678_length_248_cov_0.880000_g13572_i0 PRJNA1093380 13678 248 0.88 2.1824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 59.3 1.99e-8   NR MBI4404941.1 2026735 g13572 i0 34.1 0.991935483870968 82 54 99.2 0 2 247 28 109 MBI4404941.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 246 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32817246 32817246 PRJNA1093380_P_NODE_8540_length_270_cov_1.563452_g8434_i0 PRJNA1093380 8540 270 1.563452 4.2213204 Polyangiaceae bacterium 2268199 Bacteria Bacteria 87.8 7.03e-20   NR MFO0676510.1 2268199 g8434 i0 67.2 0.677777777777778 61 20 67.8 0 269 87 76 136 MFO0676510.1 cyanoglobin [Polyangiaceae bacterium] diamond 183 87.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;