RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1093380" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1093380 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28890476 28890476 PRJNA1093380_P_NODE_7708_length_275_cov_1.207921_g7602_i0 PRJNA1093380 7708 275 1.207921 3.32178275 Opisthokonta 33154 Echinodermata other_Eukaryota 130 1.17e-33   NR XP_038071861.1 46514 g7602 i0 75.3 39.0327272727273 89 22 97.1 0 270 4 257 345 XP_038071861.1 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like isoform X2 [Patiria miniata] diamond 10734 130 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
31386316 31386316 PRJNA1093380_P_NODE_16136_length_243_cov_0.905882_g16030_i0 PRJNA1093380 16136 243 0.905882 2.20129326 Echinodermata 7586 Echinodermata other_Eukaryota 89.4 1.26e-18   NR XP_041473352.1 7654 g16030 i0 53.2 2.92592592592593 79 37 97.5 0 240 4 42 120 XP_041473352.1 kynurenine 3-monooxygenase-like isoform X1 [Lytechinus variegatus] diamond 711 90.1 0.992230854605993 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;