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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA1093380" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1093380 · 27 ✖

analysis 1

  • diamond · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6576994 6576994 PRJNA1093380_P_NODE_12966_length_249_cov_0.875000_g12860_i0 PRJNA1093380 12966 249 0.875 2.17875 Metazoa 33208 Chordata Chordata 107 4.47e-25   NR NWX20156.1 48278 g12860 i0 64.2 15.7710843373494 81 29 97.6 0 7 249 291 371 NWX20156.1 TBA2 protein [Aegotheles bennettii] diamond 3927 107 1 Eukaryota Opisthokonta Metazoa Chordata Aves Caprimulgiformes Aegothelidae Aegotheles Aegotheles bennettii
16321629 16321629 PRJNA1093380_P_NODE_10073_length_261_cov_2.175532_g9967_i0 PRJNA1093380 10073 261 2.175532 5.67813852 Metazoa 33208 Chordata Chordata 111 3.53e-27   NR XP_035672959.1 7739 g9967 i0 62.2 12.3563218390805 90 31 100 1 1 261 75 164 XP_035672959.1 dehydrogenase/reductase SDR family member 7-like [Branchiostoma floridae] diamond 3225 111 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
19324745 19324745 PRJNA1093380_P_NODE_1016_length_545_cov_1.949153_g913_i0 PRJNA1093380 1016 545 1.949153 10.62288385 root 1 Root_unresolved Root_unresolved 375 5.9e-128   NR XP_036010302.1 10090 g913 i0 99.4 14.9174311926606 181 1 99.6 0 543 1 5 185 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 8130 375 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21876010 21876010 PRJNA1093380_P_NODE_4278_length_309_cov_0.978814_g4172_i0 PRJNA1093380 4278 309 0.978814 3.02453526 Patagioenas fasciata monilis 372326 Chordata Chordata 167 1.29e-50   NR OPJ73047.1 372326 g4172 i0 72 20.3883495145631 100 28 97.1 0 308 9 59 158 OPJ73047.1 40S ribosomal protein S12 [Patagioenas fasciata monilis] diamond 6300 167 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Patagioenas Patagioenas fasciata
27130406 27130406 PRJNA1093380_P_NODE_6162_length_284_cov_1.459716_g6056_i0 PRJNA1093380 6162 284 1.459716 4.14559344 Cnephaeus nilssonii 3371016 Chordata Chordata 97.4 3.71e-21   NR KAK1327427.1 3371016 g6056 i0 64.6 18.3591549295775 79 23 78.2 1 61 282 267 345 KAK1327427.1 hypothetical protein QTO34_014141 [Cnephaeus nilssonii] diamond 5214 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
27288841 27288841 PRJNA1093380_P_NODE_13603_length_248_cov_0.880000_g13497_i0 PRJNA1093380 13603 248 0.88 2.1824 Canis lupus familiaris 9615 Chordata Chordata 47.4 8.86e-4   NR XP_022277081.1 9615 g13497 i0 66.7 0.834677419354839 39 11 47.2 1 132 248 318 354 XP_022277081.1 protein C1orf43 homolog isoform X13 [Canis lupus familiaris] diamond 207 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
27754162 27754162 PRJNA1093380_P_NODE_11004_length_256_cov_1.683060_g10898_i0 PRJNA1093380 11004 256 1.68306 4.3086336 Chordata 7711 Chordata Chordata 78.2 1.45e-14   NR XP_067963342.1 7769 g10898 i0 45.9 23.765625 85 43 97.3 2 2 250 404 487 XP_067963342.1 polypyrimidine tract-binding protein 1-like [Myxine glutinosa] diamond 6084 78.6 0.994910941475827 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
27857225 27857225 PRJNA1093380_P_NODE_7925_length_274_cov_0.696517_g7819_i0 PRJNA1093380 7925 274 0.696517 1.90845658 Bufotes viridis 30338 Chordata Chordata 43.9 0.0203   NR CAK8629749.1 30338 g7819 i0 70 0.897810218978102 30 9 32.8 0 103 192 335 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 246 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27952069 27952069 PRJNA1093380_P_NODE_6145_length_284_cov_1.758294_g6039_i0 PRJNA1093380 6145 284 1.758294 4.99355496 Melospiza melodia maxima 2498840 Chordata Chordata 55.1 2.45e-6   NR KAF2979732.1 2498840 g6039 i0 62.5 1.55281690140845 48 18 50.7 0 7 150 267 314 KAF2979732.1 hypothetical protein EK904_012756 [Melospiza melodia maxima] diamond 441 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passerellidae Melospiza Melospiza melodia
28109738 28109738 PRJNA1093380_P_NODE_13425_length_248_cov_0.880000_g13319_i0 PRJNA1093380 13425 248 0.88 2.1824 Tinamus guttatus 94827 Chordata Chordata 63.5 6.17e-11   NR KGL82741.1 94827 g13319 i0 44.9 8.54032258064516 78 43 94.4 0 15 248 1 78 KGL82741.1 hypothetical protein N309_03837, partial [Tinamus guttatus] diamond 2118 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
28488846 28488846 PRJNA1093380_P_NODE_8547_length_270_cov_1.563452_g8441_i0 PRJNA1093380 8547 270 1.563452 4.2213204 Lampetra planeri 7750 Chordata Chordata 43.9 0.00239   NR CAL5921959.1 7750 g8441 i0 51.1 0.522222222222222 47 21 51.1 2 112 249 1 46 CAL5921959.1 unnamed protein product [Lampetra planeri] diamond 141 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
29080126 29080126 PRJNA1093380_P_NODE_6168_length_284_cov_1.459716_g6062_i0 PRJNA1093380 6168 284 1.459716 4.14559344 Chordata 7711 Chordata Chordata 171 2.1499999999999998e-52   NR KAG6921785.1 8475 g6062 i0 87.2 6.90845070422535 94 12 99.3 0 282 1 32 125 KAG6921785.1 protein phosphatase 2 scaffold subunit Aalpha, partial [Chelydra serpentina] diamond 1962 171 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelydridae Chelydra Chelydra serpentina
29395798 29395798 PRJNA1093380_P_NODE_3869_length_316_cov_0.950617_g3763_i0 PRJNA1093380 3869 316 0.950617 3.00394972 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 182 6.339999999999998e-55   NR AAI53798.1 8355 g3763 i0 84.6 1.9746835443038 104 16 98.7 0 2 313 112 215 AAI53798.1 LOC100126647 protein [Xenopus laevis] diamond 624 182 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
30099036 30099036 PRJNA1093380_P_NODE_10972_length_256_cov_1.683060_g10866_i0 PRJNA1093380 10972 256 1.68306 4.3086336 Amazona aestiva 12930 Chordata Chordata 42.7 0.0453   NR KQK76938.1 12930 g10866 i0 33.9 0.7265625 62 41 72.7 0 190 5 540 601 KQK76938.1 laminin subunit gamma-1 [Amazona aestiva] diamond 186 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Amazona Amazona aestiva
30193872 30193872 PRJNA1093380_P_NODE_1292_length_488_cov_4.715663_g1188_i0 PRJNA1093380 1292 488 4.715663 23.01243544 Bufotes viridis 30338 Chordata Chordata 62.8 1.6e-8   NR CAK8641430.1 30338 g1188 i0 47.4 0.995901639344262 78 39 47.3 2 487 257 144 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 486 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30415501 30415501 PRJNA1093380_P_NODE_14353_length_246_cov_1.549133_g14247_i0 PRJNA1093380 14353 246 1.549133 3.81086718 Zalophus californianus 9704 Chordata Chordata 43.5 0.0134   NR XP_035583707.1 9704 g14247 i0 81.8 0.268292682926829 22 4 26.8 0 11 76 121 142 XP_035583707.1 peptidyl-prolyl cis-trans isomerase C isoform X2 [Zalophus californianus] diamond 66 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Zalophus Zalophus californianus
30478460 30478460 PRJNA1093380_P_NODE_9313_length_266_cov_1.512953_g9207_i0 PRJNA1093380 9313 266 1.512953 4.02445498 Sus scrofa 9823 Chordata Chordata 172 3.86e-49   NR XP_020938199.1 9823 g9207 i0 100 2.97744360902256 88 0 99.2 0 266 3 220 307 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 792 172 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
30659271 30659271 PRJNA1093380_P_NODE_7953_length_273_cov_2.260000_g7847_i0 PRJNA1093380 7953 273 2.26 6.1698 Chordata 7711 Chordata Chordata 118 7.15e-29   NR KAE8623752.1 8364 g7847 i0 75.3 39.1098901098901 89 22 97.8 0 272 6 275 363 KAE8623752.1 hypothetical protein XENTR_v10005719 [Xenopus tropicalis] diamond 10677 119 0.991596638655462 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30785637 30785637 PRJNA1093380_P_NODE_2694_length_360_cov_2.076655_g2588_i0 PRJNA1093380 2694 360 2.076655 7.475958 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 179 3.6e-53   NR AAI53798.1 8355 g2588 i0 72.3 2.975 119 33 99.2 0 3 359 160 278 AAI53798.1 LOC100126647 protein [Xenopus laevis] diamond 1071 180 0.994444444444444 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31047361 31047361 PRJNA1093380_P_NODE_16395_length_242_cov_0.911243_g16289_i0 PRJNA1093380 16395 242 0.911243 2.20520806 Cnephaeus nilssonii 3371016 Chordata Chordata 45.1 0.00564   NR KAK1337700.1 3371016 g16289 i0 32.9 1.01652892561983 82 45 90.5 3 224 6 1 81 KAK1337700.1 hypothetical protein QTO34_002333 [Cnephaeus nilssonii] diamond 246 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
31544433 31544433 PRJNA1093380_P_NODE_2156_length_391_cov_2.786164_g2050_i0 PRJNA1093380 2156 391 2.786164 10.89390124 root 1 Root_unresolved Root_unresolved 283 6.690000000000001e-91   NR XP_030110853.2 10090 g2050 i0 100 16.9565217391304 130 0 99.7 0 390 1 170 299 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 6630 283 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31742633 31742633 PRJNA1093380_P_NODE_6797_length_280_cov_1.913043_g6691_i0 PRJNA1093380 6797 280 1.913043 5.3565204 Ranitomeya imitator 111125 Chordata Chordata 78.2 2.03e-14   NR CAJ0934947.1 111125 g6691 i0 60.3 0.675 63 25 67.5 0 279 91 616 678 CAJ0934947.1 unnamed protein product [Ranitomeya imitator] diamond 189 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31828762 31828762 PRJNA1093380_P_NODE_7177_length_278_cov_1.365854_g7071_i0 PRJNA1093380 7177 278 1.365854 3.79707412 Chordata 7711 Chordata Chordata 77 2.98e-16   NR XP_051483397.1 8895 g7071 i0 57.7 22.2086330935252 71 30 76.6 0 18 230 7 77 XP_051483397.1 60S ribosomal protein L29 isoform X1 [Apus apus] diamond 6174 77.4 0.994832041343669 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Apus Apus apus
32502326 32502326 PRJNA1093380_P_NODE_15979_length_243_cov_0.905882_g15873_i0 PRJNA1093380 15979 243 0.905882 2.20129326 Cervus hanglu yarkandensis 84702 Chordata Chordata 89 4.78e-20   NR KAF4014057.1 84702 g15873 i0 69.8 0.654320987654321 53 16 65.4 0 1 159 108 160 KAF4014057.1 hypothetical protein G4228_005418 [Cervus hanglu yarkandensis] diamond 159 89 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus hanglu
32596983 32596983 PRJNA1093380_P_NODE_2980_length_347_cov_4.711679_g2874_i0 PRJNA1093380 2980 347 4.711679 16.34952613 Bufotes viridis 30338 Chordata Chordata 66.6 1.5e-10   NR CAK8641430.1 30338 g2874 i0 50 0.674351585014409 78 37 66.6 2 2 232 144 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 234 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
32628168 32628168 PRJNA1093380_P_NODE_2360_length_377_cov_2.506579_g2254_i0 PRJNA1093380 2360 377 2.506579 9.44980283 Erpetoichthys calabaricus 27687 Chordata Chordata 132 8.109999999999998e-35   NR XP_051791274.1 27687 g2254 i0 77.8 6.50928381962865 90 19 70.8 1 10 276 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 132 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32650929 32650929 PRJNA1093380_P_NODE_11900_length_251_cov_0.865169_g11794_i0 PRJNA1093380 11900 251 0.865169 2.17157419 Testudines 8459 Chordata Chordata 55.8 9.85e-7   NR EMP30296.1 8469 g11794 i0 33.7 7.00398406374502 86 52 96.8 2 3 245 455 540 EMP30296.1 Interferon-induced protein 44-like protein [Chelonia mydas] diamond 1758 55.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;