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contig_metadata

36 rows where analysis = "diamond", bioproject = "PRJNA1092581" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 36 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1092581 · 36 ✖

analysis 1

  • diamond · 36 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9123471 9123471 PRJNA1092581_P_NODE_114468_length_232_cov_122.396226_g113935_i0 PRJNA1092581 114468 232 122.396226 283.95924432 Crocuta crocuta 9678 Chordata Chordata 58.2 1.09e-8   NR KAF0885459.1 9678 g113935 i0 69.2 1.00862068965517 39 12 50.4 0 126 10 55 93 KAF0885459.1 LORF1 protein, partial [Crocuta crocuta] diamond 234 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
19322132 19322132 PRJNA1092581_P_NODE_23756_length_571_cov_4.732932_g23230_i0 PRJNA1092581 23756 571 4.732932 27.02504172 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 165 2.1699999999999992e-43   NR XP_038660144.1 7830 g23230 i0 49.4 45.9982486865149 158 77 81.4 2 1 465 1816 1973 XP_038660144.1 phospholipid-transporting ATPase ABCA1-like isoform X2 [Scyliorhinus canicula] diamond 26265 166 0.993975903614458 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
20597808 20597808 PRJNA1092581_P_NODE_36597_length_454_cov_12.170604_g36065_i0 PRJNA1092581 36597 454 12.170604 55.25454216 Opisthokonta 33154 Chordata Chordata 176 3.6299999999999996e-54   NR XP_039272528.1 7725 g36065 i0 73.1 5.66299559471366 108 29 71.4 0 79 402 1 108 XP_039272528.1 peptidyl-prolyl cis-trans isomerase FKBP1A-like [Styela clava] diamond 2571 177 0.994350282485876 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
26592524 26592524 PRJNA1092581_P_NODE_81781_length_285_cov_4.613208_g81248_i0 PRJNA1092581 81781 285 4.613208 13.1476428 Rattus norvegicus 10116 Chordata Chordata 57.4 7.36e-9   NR EDM01463.1 10116 g81248 i0 96.6 0.305263157894737 29 1 30.5 0 186 272 1 29 EDM01463.1 rCG29847 [Rattus norvegicus] diamond 87 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
26782924 26782924 PRJNA1092581_P_NODE_68241_length_317_cov_7.262295_g67708_i0 PRJNA1092581 68241 317 7.262295 23.02147515 Mycteria americana 33587 Chordata Chordata 65.1 1.24e-9   NR KAK4832275.1 33587 g67708 i0 67.4 0.8801261829653 46 14 43.5 1 112 249 168 212 KAK4832275.1 hypothetical protein QYF61_021674 [Mycteria americana] diamond 279 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
27153337 27153337 PRJNA1092581_P_NODE_52802_length_368_cov_5.742373_g52269_i0 PRJNA1092581 52802 368 5.742373 21.13193264 Chordata 7711 Chordata Chordata 99 3e-21   NR XP_060634583.2 38937 g52269 i0 45 17.5923913043478 109 57 88.9 3 42 368 512 617 XP_060634583.2 plasma kallikrein [Anolis sagrei] diamond 6474 99.4 0.995975855130785 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis sagrei
27248615 27248615 PRJNA1092581_P_NODE_77843_length_294_cov_1.927602_g77310_i0 PRJNA1092581 77843 294 1.927602 5.66714988 Hexanchiformes 30495 Chordata Chordata 114 6.2600000000000005e-27   NR XP_070724305.1 55135 g77310 i0 68.5 3.81632653061224 92 29 93.9 0 279 4 177 268 XP_070724305.1 U4/U6.U5 tri-snRNP-associated protein 1 [Pristiophorus japonicus] diamond 1122 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
27320515 27320515 PRJNA1092581_P_NODE_121443_length_217_cov_26.694444_g120910_i0 PRJNA1092581 121443 217 26.694444 57.92694348 Petromyzon marinus 7757 Chordata Chordata 57.4 5.07e-8   NR ABA40043.1 7757 g120910 i0 71.1 1.09216589861751 38 11 52.5 0 162 49 34 71 ABA40043.1 variable lymphocyte receptor diversity region, partial [Petromyzon marinus] diamond 237 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
27343686 27343686 PRJNA1092581_P_NODE_123563_length_211_cov_5.746377_g123030_i0 PRJNA1092581 123563 211 5.746377 12.12485547 Metazoa 33208 Chordata Chordata 43.9 0.00905   NR XP_063098419.1 10141 g123030 i0 50 1.62085308056872 36 18 51.2 0 152 45 230 265 XP_063098419.1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X5 [Cavia porcellus] diamond 342 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
27564240 27564240 PRJNA1092581_P_NODE_80804_length_287_cov_4.532710_g80271_i0 PRJNA1092581 80804 287 4.53271 13.0088777 Muridae 10066 Chordata Chordata 46.6 3.68e-4   NR EDL38005.1 10090 g80271 i0 82.6 1.32752613240418 23 4 24 0 69 1 2 24 EDL38005.1 mCG1046459 [Mus musculus] diamond 381 47 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27983507 27983507 PRJNA1092581_P_NODE_14445_length_725_cov_10.167178_g13953_i0 PRJNA1092581 14445 725 10.167178 73.7120405 Sciurus carolinensis 30640 Chordata Chordata 48.9 0.0133   NR XP_047409039.1 30640 g13953 i0 32.7 1.11310344827586 101 61 39.7 3 697 410 927 1025 XP_047409039.1 protein diaphanous homolog 3 isoform X2 [Sciurus carolinensis] diamond 807 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
28015252 28015252 PRJNA1092581_P_NODE_18125_length_653_cov_3.722414_g17609_i0 PRJNA1092581 18125 653 3.722414 24.30736342 Anas platyrhynchos 8839 Chordata Chordata 61.2 9.97e-8   NR EOA93847.1 8839 g17609 i0 84.4 0.147013782542113 32 5 14.7 0 636 541 99 130 EOA93847.1 General transcription factor IIF subunit 2 [Anas platyrhynchos] diamond 96 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
28172910 28172910 PRJNA1092581_P_NODE_67946_length_318_cov_4.751020_g67413_i0 PRJNA1092581 67946 318 4.75102 15.1082436 Phasianus colchicus 9054 Chordata Chordata 52 4.75e-5   NR XP_031449379.1 9054 g67413 i0 50 0.471698113207547 50 19 41.5 1 6 137 386 435 XP_031449379.1 nucleolar and spindle-associated protein 1 isoform X2 [Phasianus colchicus] diamond 150 52 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Phasianus Phasianus colchicus
28417145 28417145 PRJNA1092581_P_NODE_47426_length_392_cov_3.144201_g46893_i0 PRJNA1092581 47426 392 3.144201 12.32526792 Rodentia 9989 Chordata Chordata 46.6 0.00641   NR EGW05876.1 10029 g46893 i0 55.3 1.44642857142857 38 17 29.1 0 383 270 3 40 EGW05876.1 Mothers against decapentaplegic-like 7 [Cricetulus griseus] diamond 567 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28552033 28552033 PRJNA1092581_P_NODE_119827_length_222_cov_11.671141_g119294_i0 PRJNA1092581 119827 222 11.671141 25.90993302 Lampetra planeri 7750 Chordata Chordata 43.9 0.00523   NR QIC33514.1 7750 g119294 i0 74.1 0.364864864864865 27 7 36.5 0 22 102 1 27 QIC33514.1 variable lymphocyte receptor B, partial [Lampetra planeri] diamond 81 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
28701292 28701292 PRJNA1092581_P_NODE_61407_length_338_cov_2.618868_g60874_i0 PRJNA1092581 61407 338 2.618868 8.85177384 Squamata 8509 Chordata Chordata 108 6.25e-25   NR XP_013923200.1 35019 g60874 i0 53 14.8402366863905 83 38 72.8 1 338 93 289 371 XP_013923200.1 PREDICTED: transcriptional repressor NF-X1 [Thamnophis sirtalis] diamond 5016 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Thamnophis Thamnophis sirtalis
28835987 28835987 PRJNA1092581_P_NODE_122148_length_215_cov_7.035211_g121615_i0 PRJNA1092581 122148 215 7.035211 15.12570365 Mus musculus 10090 Chordata Chordata 42.7 0.00408   NR EDK98622.1 10090 g121615 i0 53.8 0.544186046511628 39 16 54.4 1 47 163 26 62 EDK98622.1 mCG140831 [Mus musculus] diamond 117 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29751440 29751440 PRJNA1092581_P_NODE_45671_length_401_cov_2.027439_g45138_i0 PRJNA1092581 45671 401 2.027439 8.13003039 Phallusia mammillata 59560 Chordata Chordata 43.9 0.0257   NR CAB3263906.1 59560 g45138 i0 56 0.187032418952618 25 11 18.7 0 330 256 46 70 CAB3263906.1 MORN repeat-containing protein 2-like [Phallusia mammillata] diamond 75 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
29972765 29972765 PRJNA1092581_P_NODE_27851_length_526_cov_107.728477_g27319_i0 PRJNA1092581 27851 526 107.728477 566.65178902 Natator depressus 27790 Chordata Chordata 55.8 1.48e-5   NR CAM5111392.1 27790 g27319 i0 53.3 2.33269961977186 45 20 25.1 1 348 217 262 306 CAM5111392.1 unnamed protein product [Natator depressus] diamond 1227 55.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Natator Natator depressus
30067517 30067517 PRJNA1092581_P_NODE_71152_length_310_cov_2.299578_g70619_i0 PRJNA1092581 71152 310 2.299578 7.1286918 Pteropus alecto 9402 Chordata Chordata 56.6 1.12e-6   NR ELK10021.1 9402 g70619 i0 92 1.0741935483871 25 2 24.2 0 226 300 65 89 ELK10021.1 NMDA receptor-regulated 1-like protein [Pteropus alecto] diamond 333 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
30406856 30406856 PRJNA1092581_P_NODE_9613_length_867_cov_7.115869_g9186_i0 PRJNA1092581 9613 867 7.115869 61.69458423 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 223 4.71e-68   NR XP_031465025.1 9054 g9186 i0 51.2 23.6747404844291 244 96 82.4 8 798 85 57 283 XP_031465025.1 NAD(P)H-hydrate epimerase [Phasianus colchicus] diamond 20526 223 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Phasianus Phasianus colchicus
30667851 30667851 PRJNA1092581_P_NODE_109013_length_241_cov_5.523810_g108480_i0 PRJNA1092581 109013 241 5.52381 13.3123821 Heterocephalus glaber 10181 Chordata Chordata 45.4 0.00413   NR XP_021110107.1 10181 g108480 i0 44.1 0.734439834024896 59 29 71 2 189 19 682 738 XP_021110107.1 ras GTPase-activating protein 4B isoform X3 [Heterocephalus glaber] diamond 177 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
30794178 30794178 PRJNA1092581_P_NODE_44754_length_405_cov_6.771084_g44221_i0 PRJNA1092581 44754 405 6.771084 27.4228902 Erpetoichthys calabaricus 27687 Chordata Chordata 58.9 3.08e-7   NR XP_028673802.1 27687 g44221 i0 32.2 0.874074074074074 118 49 87.4 3 34 387 38 124 XP_028673802.1 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Erpetoichthys calabaricus] diamond 354 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30825814 30825814 PRJNA1092581_P_NODE_67874_length_318_cov_8.363265_g67341_i0 PRJNA1092581 67874 318 8.363265 26.5951827 Lampetra fluviatilis 7748 Chordata Chordata 59.7 1.03e-7   NR CAL5926779.1 7748 g67341 i0 56.3 1.81132075471698 64 23 56.6 2 264 85 42 104 CAL5926779.1 unnamed protein product [Lampetra fluviatilis] diamond 576 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
30825826 30825826 PRJNA1092581_P_NODE_89034_length_271_cov_3.575758_g88501_i0 PRJNA1092581 89034 271 3.575758 9.69030418 Mastomys coucha 35658 Chordata Chordata 45.1 0.00762   NR XP_031194896.1 35658 g88501 i0 75 0.309963099630996 28 7 31 0 8 91 317 344 XP_031194896.1 ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Mastomys coucha] diamond 84 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mastomys Mastomys coucha
31015414 31015414 PRJNA1092581_P_NODE_123155_length_212_cov_7.194245_g122622_i0 PRJNA1092581 123155 212 7.194245 15.2517994 Felis catus 9685 Chordata Chordata 107 1.39e-27   NR ATI97388.1 9685 g122622 i0 89.3 3.9622641509434 56 6 79.2 0 19 186 16 71 ATI97388.1 IgH variable region, partial [Felis catus] diamond 840 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
31015450 31015450 PRJNA1092581_P_NODE_92715_length_264_cov_9.895288_g92182_i0 PRJNA1092581 92715 264 9.895288 26.12356032 Phasianus colchicus 9054 Chordata Chordata 43.1 0.0337   NR XP_031467778.1 9054 g92182 i0 41.4 0.659090909090909 58 24 54.5 2 32 175 375 432 XP_031467778.1 uncharacterized protein LOC116241322 [Phasianus colchicus] diamond 174 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Phasianus Phasianus colchicus
31173101 31173101 PRJNA1092581_P_NODE_95055_length_260_cov_107.534759_g94522_i0 PRJNA1092581 95055 260 107.534759 279.5903734 Sus scrofa 9823 Chordata Chordata 43.5 0.0252   NR XP_020937328.1 9823 g94522 i0 46.3 0.773076923076923 67 33 73.8 1 234 43 588 654 XP_020937328.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 201 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
31553202 31553202 PRJNA1092581_P_NODE_73156_length_305_cov_2.512931_g72623_i0 PRJNA1092581 73156 305 2.512931 7.66443955 Mus musculus 10090 Chordata Chordata 45.1 0.00348   NR EDL18459.1 10090 g72623 i0 60.6 0.324590163934426 33 13 32.5 0 231 133 64 96 EDL18459.1 mCG1033067, partial [Mus musculus] diamond 99 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31733889 31733889 PRJNA1092581_P_NODE_101857_length_250_cov_3.615819_g101324_i0 PRJNA1092581 101857 250 3.615819 9.0395475 Aves 8782 Chordata Chordata 50.8 4.7e-5   NR KFP69672.1 57068 g101324 i0 51.1 2.472 47 23 56.4 0 223 83 26 72 KFP69672.1 hypothetical protein N310_12756, partial [Acanthisitta chloris] diamond 618 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Acanthisittidae Acanthisitta Acanthisitta chloris
31923817 31923817 PRJNA1092581_P_NODE_94777_length_261_cov_3.234043_g94244_i0 PRJNA1092581 94777 261 3.234043 8.44085223 Amphibia 8292 Chordata Chordata 84.7 1.12e-18   NR OCT65388.1 8355 g94244 i0 73.1 24.5747126436782 52 14 59.8 0 260 105 90 141 OCT65388.1 hypothetical protein XELAEV_18041628mg [Xenopus laevis] diamond 6414 85.5 0.990643274853801 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32090742 32090742 PRJNA1092581_P_NODE_118198_length_226_cov_7.398693_g117665_i0 PRJNA1092581 118198 226 7.398693 16.72104618 Crocuta crocuta 9678 Chordata Chordata 67 4.45e-12   NR KAF0879472.1 9678 g117665 i0 44.6 2.84070796460177 74 38 94.2 1 8 220 48 121 KAF0879472.1 LORF2 protein, partial [Crocuta crocuta] diamond 642 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32122554 32122554 PRJNA1092581_P_NODE_97958_length_256_cov_2.710383_g97425_i0 PRJNA1092581 97958 256 2.710383 6.93858048 Cricetulus griseus 10029 Chordata Chordata 49.7 8.24e-6   NR EGV95088.1 10029 g97425 i0 61.3 0.36328125 31 12 36.3 0 1 93 26 56 EGV95088.1 hypothetical protein I79_000019 [Cricetulus griseus] diamond 93 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32628148 32628148 PRJNA1092581_P_NODE_57960_length_349_cov_3.449275_g57427_i0 PRJNA1092581 57960 349 3.449275 12.03796975 Grus japonensis 30415 Chordata Chordata 46.2 0.00181   NR GAB0179340.1 30415 g57427 i0 50 0.361031518624642 42 21 36.1 0 126 1 61 102 GAB0179340.1 hypothetical protein GRJ2_000399300 [Grus japonensis] diamond 126 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
32785620 32785620 PRJNA1092581_P_NODE_96460_length_258_cov_5.243243_g95927_i0 PRJNA1092581 96460 258 5.243243 13.52756694 Mustela erminea 36723 Chordata Chordata 44.3 0.012   NR XP_032184589.1 36723 g95927 i0 41 0.453488372093023 39 23 45.3 0 221 105 21 59 XP_032184589.1 SAGA-associated factor 29 isoform X1 [Mustela erminea] diamond 117 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela erminea
32880166 32880166 PRJNA1092581_P_NODE_45780_length_400_cov_4.171254_g45247_i0 PRJNA1092581 45780 400 4.171254 16.685016 Oryctolagus cuniculus 9986 Chordata Chordata 65.5 2.49e-9   NR XP_069928590.1 9986 g45247 i0 39.9 2.145 143 59 93.8 5 376 2 664 797 XP_069928590.1 inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X1 [Oryctolagus cuniculus] diamond 858 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;