RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1092581" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1092581 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14225985 14225985 PRJNA1092581_P_NODE_56012_length_356_cov_4.204947_g55479_i0 PRJNA1092581 56012 356 4.204947 14.96961132 Cetobacterium sp. NK 2071632 Bacteria Bacteria 193 2.62e-57   NR WP_256690800.1 2993530 g55479 i0 78.4 0.97752808988764 116 25 97.8 0 354 7 322 437 WP_256690800.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cetobacterium sp. NK01] diamond 348 193 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. NK01
15499268 15499268 PRJNA1092581_P_NODE_31853_length_490_cov_4.357314_g31321_i0 PRJNA1092581 31853 490 4.357314 21.3508386 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 215 4.71e-69   NR WP_021766239.1 712359 g31321 i0 88.1 0.771428571428571 126 15 77.1 0 451 74 1 126 WP_021766239.1 MazG nucleotide pyrophosphohydrolase domain-containing protein [Leptotrichia sp. oral taxon 215] diamond 378 215 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
31331474 31331474 PRJNA1092581_P_NODE_89816_length_270_cov_1.446701_g89283_i0 PRJNA1092581 89816 270 1.446701 3.9060927 Sebaldella termitidis 826 Bacteria Bacteria 60.1 1.83e-8   NR WP_041310000.1 826 g89283 i0 37.8 1 90 51 97.8 2 1 264 45 131 WP_041310000.1 glycerophosphodiester phosphodiesterase [Sebaldella termitidis] diamond 270 60.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella termitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;