RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27447016 27447016 PRJNA1089179_P_NODE_1283_length_614_cov_9.158965_g1266_i0 PRJNA1089179 1283 614 9.158965 56.2360451 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 50.8 0.0015   NR MBK8170205.1 2510337 g1266 i0 42.4 1.05537459283388 59 30 26.9 2 454 290 204 262 MBK8170205.1 hypothetical protein [Sandaracinaceae bacterium] diamond 648 50.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
28709901 28709901 PRJNA1089179_P_NODE_87_length_1444_cov_10.754923_g79_i0 PRJNA1089179 87 1444 10.754923 155.30108812 Polyangiaceae bacterium 2268199 Bacteria Bacteria 53.1 0.00283   NR HVW24259.1 2268199 g79 i0 47.7 0.0914127423822715 44 23 9.1 0 221 352 214 257 HVW24259.1 VCBS repeat-containing protein [Polyangiaceae bacterium] diamond 132 53.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30952400 30952400 PRJNA1089179_P_NODE_5074_length_379_cov_2.183007_g5056_i0 PRJNA1089179 5074 379 2.183007 8.27359653 Myxococcales bacterium 2026763 Bacteria Bacteria 182 2.809999999999999e-55   NR MEO1915263.1 2026763 g5056 i0 84.7 0.775725593667546 98 15 77.6 0 84 377 126 223 MEO1915263.1 50S ribosomal protein L5 [Myxococcales bacterium] diamond 294 182 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;