RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12948498 12948498 PRJNA1089179_P_NODE_6451_length_347_cov_1.189781_g6433_i0 PRJNA1089179 6451 347 1.189781 4.12854007 root 1 Root_unresolved Root_unresolved 204 7.16e-63   NR XP_046343609.1 6454 g6433 i0 84.3 112.348703170029 115 18 99.4 0 2 346 119 233 XP_046343609.1 glyceraldehyde-3-phosphate dehydrogenase [Haliotis rufescens] diamond 38985 205 0.995121951219512 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
32407164 32407164 PRJNA1089179_P_NODE_7199_length_332_cov_56.949807_g7181_i0 PRJNA1089179 7199 332 56.949807 189.07335924 Patella caerulea 87958 Mollusca Mollusca 80.9 2.15e-17   NR KAK6180397.1 87958 g7181 i0 45.7 1.34638554216867 70 38 63.3 0 265 56 18 87 KAK6180397.1 hypothetical protein SNE40_012562 [Patella caerulea] diamond 447 80.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella caerulea
32754207 32754207 PRJNA1089179_P_NODE_10400_length_287_cov_50.780374_g10382_i0 PRJNA1089179 10400 287 50.780374 145.73967338 Potamilus streckersoni 2493646 Mollusca Mollusca 60.1 1.08e-9   NR KAK3596709.1 2493646 g10382 i0 51.7 2.60278745644599 60 25 58.5 1 46 213 1 60 KAK3596709.1 hypothetical protein CHS0354_025007 [Potamilus streckersoni] diamond 747 60.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Potamilus Potamilus streckersoni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;