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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1089179 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6572683 6572683 PRJNA1089179_P_NODE_14226_length_252_cov_1.324022_g14208_i0 PRJNA1089179 14226 252 1.324022 3.33653544 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 155 2.6099999999999993e-43   NR HZG97029.1 1871072 g14208 i0 94 0.988095238095238 83 5 98.8 0 251 3 114 196 HZG97029.1 HRDC domain-containing protein [Nocardioidaceae bacterium] diamond 249 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
9122406 9122406 PRJNA1089179_P_NODE_12108_length_271_cov_1.550505_g12090_i0 PRJNA1089179 12108 271 1.550505 4.20186855 uncultured Friedmanniella sp. 335381 Bacteria Bacteria 155 1.1199999999999996e-43   NR WP_375431120.1 335381 g12090 i0 86.5 3.9409594095941 89 12 98.5 0 3 269 71 159 WP_375431120.1 TadA family conjugal transfer-associated ATPase [uncultured Friedmanniella sp.] diamond 1068 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Friedmanniella uncultured Friedmanniella sp.
11673469 11673469 PRJNA1089179_P_NODE_13130_length_261_cov_35.808511_g13112_i0 PRJNA1089179 13130 261 35.808511 93.46021371 Janibacter sp. DB-4 1870928 Bacteria Bacteria 110 4.12e-28   NR WP_277454283.1 3028808 g13112 i0 70.1 1.58620689655172 67 20 77 0 228 28 9 75 WP_277454283.1 DUF2231 domain-containing protein [Janibacter sp. DB-40] diamond 414 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter sp. DB-40
12496344 12496344 PRJNA1089179_P_NODE_18230_length_207_cov_5.044776_g18212_i0 PRJNA1089179 18230 207 5.044776 10.44268632 Bacteria 2 Bacteria Bacteria 122 2.8e-30   NR HYN18101.1 1883427 g18212 i0 91.9 10.7826086956522 62 5 89.9 0 20 205 159 220 HYN18101.1 sugar phosphate nucleotidyltransferase [Actinomycetes bacterium] diamond 2232 123 0.991869918699187 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
15497394 15497394 PRJNA1089179_P_NODE_10713_length_284_cov_37.227488_g10695_i0 PRJNA1089179 10713 284 37.227488 105.72606592 uncultured Friedmanniella sp. 335381 Bacteria Bacteria 147 8.93e-39   NR WP_294694727.1 335381 g10695 i0 91.3 1.69014084507042 80 7 84.5 0 260 21 590 669 WP_294694727.1 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit, partial [uncultured Friedmanniella sp.] diamond 480 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Friedmanniella uncultured Friedmanniella sp.
21419561 21419561 PRJNA1089179_P_NODE_14717_length_250_cov_0.870056_g14699_i0 PRJNA1089179 14717 250 0.870056 2.17514 Pseudonocardia sp. 60912 Bacteria Bacteria 114 1.89e-27   NR HVH22789.1 60912 g14699 i0 76.9 0.936 78 18 93.6 0 17 250 72 149 HVH22789.1 glycosyltransferase [Pseudonocardia sp.] diamond 234 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp.
27121839 27121839 PRJNA1089179_P_NODE_17402_length_240_cov_3.832335_g17384_i0 PRJNA1089179 17402 240 3.832335 9.197604 Bacteria 2 Bacteria Bacteria 42.7 0.0362   NR WP_184836471.1 643052 g17384 i0 45.3 1.25 53 25 61.3 2 171 25 197 249 WP_184836471.1 DUF2207 family protein [Allocatelliglobosispora scoriae] diamond 300 43.1 0.990719257540603 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Allocatelliglobosispora Allocatelliglobosispora scoriae
27699685 27699685 PRJNA1089179_P_NODE_13004_length_263_cov_1.263158_g12986_i0 PRJNA1089179 13004 263 1.263158 3.32210554 Micromonosporaceae bacterium 1873464 Bacteria Bacteria 79 4.58e-16   NR HEX5595494.1 1873464 g12986 i0 46.2 1.75665399239544 78 42 89 0 27 260 40 117 HEX5595494.1 hypothetical protein [Micromonosporaceae bacterium] diamond 462 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae   Micromonosporaceae bacterium
28078155 28078155 PRJNA1089179_P_NODE_14725_length_250_cov_0.870056_g14707_i0 PRJNA1089179 14725 250 0.870056 2.17514 Leifsonia sp. AG29 2598860 Bacteria Bacteria 101 7.89e-23   NR WP_233265485.1 2598860 g14707 i0 55.4 0.996 83 35 99.6 1 250 2 1332 1412 WP_233265485.1 DEAD/DEAH box helicase [Leifsonia sp. AG29] diamond 249 101 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. AG29
29301101 29301101 PRJNA1089179_P_NODE_17309_length_241_cov_0.916667_g17291_i0 PRJNA1089179 17309 241 0.916667 2.20916747 Microlunatus 29404 Bacteria Bacteria 98.6 8.2100000000000005e-22   NR WP_183337207.1 53388 g17291 i0 63.3 1.96680497925311 79 29 98.3 0 2 238 375 453 WP_183337207.1 adenylate/guanylate cyclase domain-containing protein [Microlunatus antarcticus] diamond 474 98.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus antarcticus
29814728 29814728 PRJNA1089179_P_NODE_12691_length_265_cov_13.729167_g12673_i0 PRJNA1089179 12691 265 13.729167 36.38229255 Actinomycetota bacterium 2900548 Bacteria Bacteria 110 4.0199999999999998e-28   NR MDP9071726.1 2900548 g12673 i0 80 0.849056603773585 75 14 83.8 1 23 244 58 132 MDP9071726.1 hypothetical protein [Actinomycetota bacterium] diamond 225 110 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30667832 30667832 PRJNA1089179_P_NODE_15473_length_247_cov_0.885057_g15455_i0 PRJNA1089179 15473 247 0.885057 2.18609079 Streptomyces lucensis 67319 Bacteria Bacteria 42.7 0.0384   NR WP_229815914.1 67319 g15455 i0 40.5 0.449392712550607 37 15 36.4 1 158 247 310 346 WP_229815914.1 glycosyltransferase 87 family protein [Streptomyces lucensis] diamond 111 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lucensis
31236473 31236473 PRJNA1089179_P_NODE_12115_length_271_cov_1.409091_g12097_i0 PRJNA1089179 12115 271 1.409091 3.81863661 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 114 7.73e-28   NR HZG98136.1 1871072 g12097 i0 88 0.830258302583026 75 8 83 1 270 46 333 406 HZG98136.1 MFS transporter [Nocardioidaceae bacterium] diamond 225 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
31268268 31268268 PRJNA1089179_P_NODE_13175_length_261_cov_2.234043_g13157_i0 PRJNA1089179 13175 261 2.234043 5.83085223 Actinomycetota bacterium 2900548 Bacteria Bacteria 66.2 1.95e-10   NR MBW3638459.1 2900548 g13157 i0 53.9 1.77011494252874 76 25 82.8 2 38 253 211 280 MBW3638459.1 hypothetical protein [Actinomycetota bacterium] diamond 462 66.2 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31616127 31616127 PRJNA1089179_P_NODE_15376_length_247_cov_1.758621_g15358_i0 PRJNA1089179 15376 247 1.758621 4.34379387 Microlunatus sp. 39595 Bacteria Bacteria 55.1 1.68e-6   NR HET9649852.1 39595 g15358 i0 87.1 0.376518218623482 31 4 37.7 0 205 113 330 360 HET9649852.1 IS110 family transposase [Microlunatus sp.] diamond 93 55.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sp.
31869113 31869113 PRJNA1089179_P_NODE_15677_length_246_cov_1.456647_g15659_i0 PRJNA1089179 15677 246 1.456647 3.58335162 Microlunatus elymi 2596828 Bacteria Bacteria 78.6 9.39e-15   NR WP_143985258.1 2596828 g15659 i0 52.4 1 82 38 98.8 1 2 244 486 567 WP_143985258.1 MobF family relaxase [Microlunatus elymi] diamond 246 78.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus elymi
32058993 32058993 PRJNA1089179_P_NODE_16138_length_245_cov_0.895349_g16120_i0 PRJNA1089179 16138 245 0.895349 2.19360505 Actinomycetota bacterium 2900548 Bacteria Bacteria 115 2.61e-29   NR MDP9164744.1 2900548 g16120 i0 75.3 0.991836734693878 81 20 99.2 0 243 1 192 272 MDP9164744.1 alpha/beta hydrolase [Actinomycetota bacterium] diamond 243 115 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32217315 32217315 PRJNA1089179_P_NODE_14438_length_251_cov_0.865169_g14420_i0 PRJNA1089179 14438 251 0.865169 2.17157419 Calidifontibacter indicus 419650 Bacteria Bacteria 174 6.529999999999999e-52   NR WP_115923085.1 419650 g14420 i0 98.8 0.99203187250996006 83 1 99.2 0 249 1 82 164 WP_115923085.1 acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein [Calidifontibacter indicus] diamond 249 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Calidifontibacter Calidifontibacter indicus
32280753 32280753 PRJNA1089179_P_NODE_15319_length_247_cov_16.459770_g15301_i0 PRJNA1089179 15319 247 16.45977 40.6556319 Rubrobacter sp. 2036010 Bacteria Bacteria 92.8 7.42e-23   NR HVD44812.1 2036010 g15301 i0 100 0.522267206477733 43 0 52.2 0 142 14 1 43 HVD44812.1 hypothetical protein [Rubrobacter sp.] diamond 129 92.8 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;