RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26655777 26655777 PRJNA1089179_P_NODE_121_length_1307_cov_2.576175_g112_i0 PRJNA1089179 121 1307 2.576175 33.67060725 Methanosarcina sp. 2213 Archaea Archaea 228 6.15e-70   NR HET8686713.1 2213 g112 i0 73.4 0.638102524866106 139 37 31.9 0 379 795 1 139 HET8686713.1 M15 family metallopeptidase [Methanosarcina sp.] diamond 834 228 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28615082 28615082 PRJNA1089179_P_NODE_5787_length_361_cov_1.604167_g5769_i0 PRJNA1089179 5787 361 1.604167 5.79104287 Methanosarcina sp. 2213 Archaea Archaea 122 3.95e-33   NR HET8686713.1 2213 g5769 i0 66.7 1.39612188365651 84 28 69.8 0 253 2 1 84 HET8686713.1 M15 family metallopeptidase [Methanosarcina sp.] diamond 504 122 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30848834 30848834 PRJNA1089179_P_NODE_16574_length_243_cov_1.358824_g16556_i0 PRJNA1089179 16574 243 1.358824 3.30194232 root 1 Root_unresolved Root_unresolved 93.6 2.41e-21   NR NYB27770.1 2099680 g16556 i0 90.2 1.25925925925926 51 5 63 0 155 3 179 229 NYB27770.1 transposase [Methanobacteriaceae archaeon] diamond 306 94 0.995744680851064 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;