RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1089179 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27035907 27035907 PRJNA1089179_P_NODE_11302_length_279_cov_1.218447_g11284_i0 PRJNA1089179 11302 279 1.218447 3.39946713 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 74.3 4.41e-13   NR KAI2504837.1 210448 g11284 i0 51.4 0.774193548387097 72 35 77.4 0 39 254 40 111 KAI2504837.1 hypothetical protein MHU86_9607 [Fragilaria crotonensis] diamond 216 74.3 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
27099101 27099101 PRJNA1089179_P_NODE_2882_length_469_cov_2.477273_g2864_i0 PRJNA1089179 2882 469 2.477273 11.61841037 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 87 1.47e-16   NR KAI2504837.1 210448 g2864 i0 39.6 0.889125799573561 139 56 88.9 3 422 6 416 526 KAI2504837.1 hypothetical protein MHU86_9607 [Fragilaria crotonensis] diamond 417 87 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
27762773 27762773 PRJNA1089179_P_NODE_16424_length_244_cov_0.900585_g16406_i0 PRJNA1089179 16424 244 0.900585 2.1974274 Vitrella brassicaformis CCMP3155 1169540 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.79e-4   NR CEM05527.1 1169540 g16406 i0 33.8 0.872950819672131 71 45 87.3 1 6 218 163 231 CEM05527.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 213 49.3 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
29017218 29017218 PRJNA1089179_P_NODE_14328_length_251_cov_1.573034_g14310_i0 PRJNA1089179 14328 251 1.573034 3.94831534 root 1 Root_unresolved Root_unresolved 115 1.46e-27   NR OWZ10377.1 4795 g14310 i0 62.7 59.2948207171315 83 31 99.2 0 2 250 16 98 OWZ10377.1 Gag-pol fusion protein, partial [Phytophthora megakarya] diamond 14883 116 0.991379310344828 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
29656534 29656534 PRJNA1089179_P_NODE_18310_length_196_cov_6.138211_g18292_i0 PRJNA1089179 18310 196 6.138211 12.03089356 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 89.7 5.67e-19   NR OMJ78672.1 5963 g18292 i0 83 0.811224489795918 53 9 81.1 0 178 20 577 629 OMJ78672.1 hypothetical protein SteCoe_21479 [Stentor coeruleus] diamond 159 89.7 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
32438986 32438986 PRJNA1089179_P_NODE_12859_length_264_cov_1.544503_g12841_i0 PRJNA1089179 12859 264 1.544503 4.07748792 Parmales sp. scaly parma 2962637 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.08e-9   NR GMI49381.1 2962637 g12841 i0 92.9 1.90909090909091 28 2 31.8 0 114 197 61 88 GMI49381.1 hypothetical protein ScalyP_jg11825 [Parmales sp. scaly parma] diamond 504 60.8 1 Eukaryota Sar     Bolidophyceae Parmales     Parmales sp. scaly parma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;