RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1089179" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1089179 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31892222 31892222 PRJNA1089179_P_NODE_217_length_1040_cov_140.236815_g206_i0 PRJNA1089179 217 1040 140.236815 1458.462876 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 49.7 0.0156   NR XP_002675654.1 5762 g206 i0 43.4 1.12211538461538 53 30 15.3 0 203 45 450 502 XP_002675654.1 uncharacterized protein NAEGRDRAFT_80282 [Naegleria gruberi] diamond 1167 50.1 0.992015968063872 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32785568 32785568 PRJNA1089179_P_NODE_40_length_1898_cov_27.031233_g35_i0 PRJNA1089179 40 1898 27.031233 513.05280234 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 57 2.7e-4   NR XP_002673421.1 5762 g35 i0 40 0.723919915700738 90 50 13.6 1 1058 801 398 487 XP_002673421.1 rabGTPase-activating protein [Naegleria gruberi] diamond 1374 57 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;