RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1088503" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1088503 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15497164 15497164 PRJNA1088503_P_NODE_5953_length_322_cov_2.686007_g5581_i0 PRJNA1088503 5953 322 2.686007 8.64894254 Branchiostoma belcheri 7741 Chordata Chordata 168 8.919999999999999e-52   NR XP_019635034.1 7741 g5581 i0 86 4.27639751552795 93 13 86.6 0 297 19 11 103 XP_019635034.1 PREDICTED: 60S ribosomal protein L37a [Branchiostoma belcheri] diamond 1377 168 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26940863 26940863 PRJNA1088503_P_NODE_11582_length_154_cov_1.520000_g11210_i0 PRJNA1088503 11582 154 1.52 2.3408 Microtus ochrogaster 79684 Chordata Chordata 97.1 2.03e-22   NR KAH0511746.1 79684 g11210 i0 86 1.79220779220779 50 7 97.4 0 3 152 119 168 KAH0511746.1 N-alpha-acetyltransferase 11 [Microtus ochrogaster] diamond 276 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
27121835 27121835 PRJNA1088503_P_NODE_5222_length_356_cov_2.740061_g4850_i0 PRJNA1088503 5222 356 2.740061 9.75461716 Metazoa 33208 Chordata Chordata 120 1.03e-32   NR XP_035679522.1 7739 g4850 i0 82.5 1.50842696629213 63 11 53.1 0 352 164 29 91 XP_035679522.1 40S ribosomal protein S29 [Branchiostoma floridae] diamond 537 120 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27888678 27888678 PRJNA1088503_P_NODE_8445_length_232_cov_1.960591_g8073_i0 PRJNA1088503 8445 232 1.960591 4.54857112 Petromyzon marinus 7757 Chordata Chordata 124 4.92e-35   NR XP_032827347.1 7757 g8073 i0 91.2 7.03448275862069 68 6 87.9 0 28 231 1 68 XP_032827347.1 LSM8 homolog, U6 small nuclear RNA associated [Petromyzon marinus] diamond 1632 124 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
28330740 28330740 PRJNA1088503_P_NODE_11046_length_165_cov_2.375000_g10674_i0 PRJNA1088503 11046 165 2.375 3.91875 Rhinatrema bivittatum 194408 Chordata Chordata 53.9 1.38e-6   NR XP_029440031.1 194408 g10674 i0 80 1.27272727272727 35 7 63.6 0 7 111 262 296 XP_029440031.1 60S ribosomal protein L5-like isoform X1 [Rhinatrema bivittatum] diamond 210 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
29490363 29490363 PRJNA1088503_P_NODE_3550_length_471_cov_17013.391403_g3216_i0 PRJNA1088503 3550 471 17013.391403 80133.07350813 Testudines 8459 Chordata Chordata 121 5.95e-32   NR CAM2115384.1 8467 g3216 i0 76.3 2.17834394904459 114 27 72.6 0 92 433 38 151 CAM2115384.1 unnamed protein product [Caretta caretta] diamond 1026 121 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
30185239 30185239 PRJNA1088503_P_NODE_4652_length_391_cov_2.287293_g4288_i0 PRJNA1088503 4652 391 2.287293 8.94331563 Chordata 7711 Chordata Chordata 101 2.97e-24   NR XP_006002317.1 7897 g4288 i0 74.6 23.9462915601023 63 16 48.3 0 1 189 66 128 XP_006002317.1 protein BTG2 [Latimeria chalumnae] diamond 9363 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
31964018 31964018 PRJNA1088503_P_NODE_10638_length_174_cov_1989.710345_g10266_i0 PRJNA1088503 10638 174 1989.710345 3462.0960003 Branchiostoma belcheri 7741 Chordata Chordata 73.9 1.44e-13   NR KAI8494249.1 7741 g10266 i0 79.5 1.3448275862069 44 9 75.9 0 41 172 606 649 KAI8494249.1 Elongation factor 1-alpha 1 [Branchiostoma belcheri] diamond 234 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32533849 32533849 PRJNA1088503_P_NODE_10559_length_177_cov_1.932432_g10187_i0 PRJNA1088503 10559 177 1.932432 3.42040464 Myxine glutinosa 7769 Chordata Chordata 115 8.599999999999999e-32   NR XP_067986443.1 7769 g10187 i0 89.8 4 59 6 100 0 1 177 38 96 XP_067986443.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [Myxine glutinosa] diamond 708 115 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;