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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA1087264" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1087264 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26909374 26909374 PRJNA1087264_P_NODE_3962_length_327_cov_2.233813_g3880_i0 PRJNA1087264 3962 327 2.233813 7.30456851 Acanthocheilonema viteae 6277 Nematoda Nematoda 93.6 1.52e-19   NR VBB29199.1 6277 g3880 i0 73.2 4.47706422018349 56 15 51.4 0 49 216 65 120 VBB29199.1 unnamed protein product [Acanthocheilonema viteae] diamond 1464 93.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
27130323 27130323 PRJNA1087264_P_NODE_20722_length_162_cov_0.902655_g20640_i0 PRJNA1087264 20722 162 0.902655 1.4623011 Mesorhabditis spiculigera 96644 Nematoda Nematoda 63.9 4.04e-10   NR CAJ0580161.1 96644 g20640 i0 52.9 1.87037037037037 51 23 92.6 1 12 161 145 195 CAJ0580161.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 303 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27469876 27469876 PRJNA1087264_P_NODE_7503_length_230_cov_1.127072_g7421_i0 PRJNA1087264 7503 230 1.127072 2.5922656 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 91.7 5.25e-22   NR XGW25713.1 6289 g7421 i0 70 2.68695652173913 60 18 78.3 0 49 228 30 89 XGW25713.1 hypothetical protein V3C99_006822 [Haemonchus contortus] diamond 618 91.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
27596191 27596191 PRJNA1087264_P_NODE_4724_length_297_cov_2.100806_g4642_i0 PRJNA1087264 4724 297 2.100806 6.23939382 Trichinella 6333 Nematoda Nematoda 47 0.00223   NR KAL1241498.1 6334 g4642 i0 37.9 2.65656565656566 87 42 77.8 4 255 25 93 177 KAL1241498.1 SCO-spondin [Trichinella spiralis] diamond 789 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
27974906 27974906 PRJNA1087264_P_NODE_14385_length_167_cov_0.864407_g14303_i0 PRJNA1087264 14385 167 0.864407 1.44355969 Metazoa 33208 Nematoda Nematoda 42.7 0.0134   NR CDW56653.1 36087 g14303 i0 38.9 1.9940119760479 54 32 95.2 1 167 9 254 307 CDW56653.1 desert hedgehog protein [Trichuris trichiura] diamond 333 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
28511662 28511662 PRJNA1087264_P_NODE_9227_length_207_cov_1.936709_g9145_i0 PRJNA1087264 9227 207 1.936709 4.00898763 Trichinella 6333 Nematoda Nematoda 48.5 2.04e-4   NR KRZ67201.1 268474 g9145 i0 48 3.79710144927536 50 26 72.5 0 170 21 59 108 KRZ67201.1 Cathepsin B-like cysteine proteinase, partial [Trichinella papuae] diamond 786 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
29364329 29364329 PRJNA1087264_P_NODE_9969_length_200_cov_0.920530_g9887_i0 PRJNA1087264 9969 200 0.92053 1.84106 Trichinella 6333 Nematoda Nematoda 65.5 2.02e-10   NR KRY29802.1 6334 g9887 i0 48.4 6.72 64 33 96 0 8 199 533 596 KRY29802.1 Mitochondrial import inner membrane translocase subunit TIM50-C [Trichinella spiralis] diamond 1344 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
30541418 30541418 PRJNA1087264_P_NODE_2673_length_407_cov_2.036313_g2592_i0 PRJNA1087264 2673 407 2.036313 8.28779391 Caenorhabditis remanei 31234 Nematoda Nematoda 48.9 8.02e-4   NR XP_053582573.1 31234 g2592 i0 56.6 0.390663390663391 53 21 37.6 1 255 407 112 164 XP_053582573.1 hypothetical protein GCK72_020574 [Caenorhabditis remanei] diamond 159 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
30604573 30604573 PRJNA1087264_P_NODE_9753_length_202_cov_0.921569_g9671_i0 PRJNA1087264 9753 202 0.921569 1.86156938 Caenorhabditis briggsae 6238 Nematoda Nematoda 62 3.5e-9   NR UMM41932.1 6238 g9671 i0 58.6 0.861386138613861 58 23 86.1 1 201 28 588 644 UMM41932.1 hypothetical protein L5515_017967 [Caenorhabditis briggsae] diamond 174 62 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
31386296 31386296 PRJNA1087264_P_NODE_20236_length_162_cov_0.902655_g20154_i0 PRJNA1087264 20236 162 0.902655 1.4623011 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.8 2.18e-17   NR CAJ0602780.1 53992 g20154 i0 74.1 22.6111111111111 54 14 100 0 162 1 46 99 CAJ0602780.1 unnamed protein product [Cylicocyclus nassatus] diamond 3663 83.2 0.995192307692308 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
31774185 31774185 PRJNA1087264_P_NODE_13617_length_170_cov_1.685950_g13535_i0 PRJNA1087264 13617 170 1.68595 2.866115 Koerneria luziae 912562 Nematoda Nematoda 60.5 2.24e-9   NR AIL48340.1 912562 g13535 i0 64.4 2.38235294117647 45 16 79.4 0 30 164 1 45 AIL48340.1 large subunit ribosomal protein 9, partial [Koerneria luziae] diamond 405 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria luziae
31932361 31932361 PRJNA1087264_P_NODE_14937_length_167_cov_0.864407_g14855_i0 PRJNA1087264 14937 167 0.864407 1.44355969 Cooperia oncophora 27828 Nematoda Nematoda 45.8 9.45e-4   NR KAK6056884.1 27828 g14855 i0 43.5 2.44311377245509 46 26 82.6 0 140 3 184 229 KAK6056884.1 f-actin capping protein alpha subunit [Cooperia oncophora] diamond 408 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
32208668 32208668 PRJNA1087264_P_NODE_19198_length_163_cov_0.894737_g19116_i0 PRJNA1087264 19198 163 0.894737 1.45842131 Trichinella 6333 Nematoda Nematoda 47.4 2.99e-4   NR OUC40586.1 6335 g19116 i0 51.2 8.30061349693251 41 18 75.5 1 163 41 786 824 OUC40586.1 MA3 domain protein [Trichinella nativa] diamond 1353 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
32745742 32745742 PRJNA1087264_P_NODE_18580_length_164_cov_0.886957_g18498_i0 PRJNA1087264 18580 164 0.886957 1.45460948 Rhabditida 6236 Nematoda Nematoda 63.5 4.27e-10   NR VBB26108.1 6277 g18498 i0 69 4.60975609756098 42 13 76.8 0 3 128 227 268 VBB26108.1 unnamed protein product [Acanthocheilonema viteae] diamond 756 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;