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contig_metadata

33 rows where analysis = "diamond", bioproject = "PRJNA1087264" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1087264 · 33 ✖

analysis 1

  • diamond · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1017354 1017354 PRJNA1087264_P_NODE_441_length_974_cov_2.455135_g388_i0 PRJNA1087264 441 974 2.455135 23.9130149 Opisthokonta 33154 Chordata Chordata 302 5.240000000000001e-97   NR XP_036603878.1 9337 g388 i0 69.1 17.2546201232033 233 72 71.8 0 972 274 143 375 XP_036603878.1 LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Trichosurus vulpecula] diamond 16806 305 0.99016393442623 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
2744723 2744723 PRJNA1087264_P_NODE_1443_length_558_cov_1.766208_g1366_i0 PRJNA1087264 1443 558 1.766208 9.85544064 Dendropsophus ebraccatus 150705 Chordata Chordata 61.2 3.08e-7   NR XP_069830558.1 150705 g1366 i0 37.9 1.47849462365591 87 49 46.2 2 483 226 439 521 XP_069830558.1 nucleolin [Dendropsophus ebraccatus] diamond 825 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
9121687 9121687 PRJNA1087264_P_NODE_3748_length_337_cov_2.125000_g3666_i0 PRJNA1087264 3748 337 2.125 7.16125 Oryctolagus cuniculus 9986 Chordata Chordata 131 1.4e-36   NR 3J0L_L 9986 g3666 i0 85.1 1.9673590504451 74 11 65.9 0 337 116 67 140 3J0L_L Chain L, Ribosomal protein S23 [Oryctolagus cuniculus] diamond 663 131 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
15045133 15045133 PRJNA1087264_P_NODE_16252_length_166_cov_0.871795_g16170_i0 PRJNA1087264 16252 166 0.871795 1.4471797 Microcaecilia unicolor 1415580 Chordata Chordata 68.6 1.04e-11   NR XP_030047519.1 1415580 g16170 i0 62.5 10.7349397590361 56 20 99.4 1 166 2 483 538 XP_030047519.1 serine/threonine-protein kinase DCLK2 isoform X1 [Microcaecilia unicolor] diamond 1782 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
16771034 16771034 PRJNA1087264_P_NODE_4254_length_316_cov_0.947566_g4172_i0 PRJNA1087264 4254 316 0.947566 2.99430856 Branchiostoma floridae 7739 Chordata Chordata 76.6 9.22e-14   NR XP_035671522.1 7739 g4172 i0 63.5 0.598101265822785 63 22 58.9 1 186 1 101 163 XP_035671522.1 subtilisin-like serine protease Rho m 2.0101 [Branchiostoma floridae] diamond 189 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
19319717 19319717 PRJNA1087264_P_NODE_10536_length_194_cov_1.751724_g10454_i0 PRJNA1087264 10536 194 1.751724 3.39834456 Hemiscyllium ocellatum 170820 Chordata Chordata 101 1.7799999999999994e-24   NR XP_060692540.1 170820 g10454 i0 76.6 22.639175257732 64 15 99 0 2 193 161 224 XP_060692540.1 14-3-3 protein beta/alpha-A-like [Hemiscyllium ocellatum] diamond 4392 101 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Hemiscyllium Hemiscyllium ocellatum
20595174 20595174 PRJNA1087264_P_NODE_7957_length_223_cov_1.465517_g7875_i0 PRJNA1087264 7957 223 1.465517 3.26810291 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 119 1.52e-32   NR 3J0L_K 9986 g7875 i0 79.7 99.5515695067265 74 15 99.6 0 223 2 49 122 3J0L_K Chain K, Ribosomal protein S14 [Oryctolagus cuniculus] diamond 22200 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
23146225 23146225 PRJNA1087264_P_NODE_17979_length_164_cov_0.886957_g17897_i0 PRJNA1087264 17979 164 0.886957 1.45460948 Metazoa 33208 Chordata Chordata 107 1.6500000000000002e-26   NR XP_002131217.1 7719 g17897 i0 98.1 151.134146341463 54 1 98.8 0 1 162 144 197 XP_002131217.1 rRNA 2'-O-methyltransferase fibrillarin [Ciona intestinalis] diamond 24786 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
24419890 24419890 PRJNA1087264_P_NODE_3140_length_373_cov_1.324074_g3059_i0 PRJNA1087264 3140 373 1.324074 4.93879602 root 1 Root_unresolved Root_unresolved 211 4.5000000000000003e-66   NR XP_012422504.1 9708 g3059 i0 78.2 17.0026809651475 124 27 99.7 0 2 373 49 172 XP_012422504.1 PREDICTED: guanine nucleotide-binding protein subunit beta-2-like 1 isoform X2 [Odobenus rosmarus divergens] diamond 6342 212 0.995283018867924 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Odobenidae Odobenus Odobenus rosmarus
24419949 24419949 PRJNA1087264_P_NODE_9400_length_205_cov_2.608974_g9318_i0 PRJNA1087264 9400 205 2.608974 5.3483967 Opisthokonta 33154 Chordata Chordata 101 1.04e-24   NR KAF6349888.1 51298 g9318 i0 78.6 6.54146341463415 56 12 82 0 170 3 12 67 KAF6349888.1 receptor for activated C kinase 1 [Myotis myotis] diamond 1341 101 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
26615655 26615655 PRJNA1087264_P_NODE_7921_length_224_cov_1.080000_g7839_i0 PRJNA1087264 7921 224 1.08 2.4192 Metazoa 33208 Chordata Chordata 102 6.949999999999999e-24   NR XP_039263546.1 7725 g7839 i0 76.8 7.125 56 13 75 0 224 57 283 338 XP_039263546.1 cathepsin B-like [Styela clava] diamond 1596 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
26900877 26900877 PRJNA1087264_P_NODE_18721_length_164_cov_0.886957_g18639_i0 PRJNA1087264 18721 164 0.886957 1.45460948 Metazoa 33208 Chordata Chordata 46.6 5.58e-4   NR XP_060707094.1 170820 g18639 i0 38.5 6.69512195121951 52 32 95.1 0 3 158 480 531 XP_060707094.1 uncharacterized protein LOC132832899 [Hemiscyllium ocellatum] diamond 1098 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Hemiscyllium Hemiscyllium ocellatum
27130324 27130324 PRJNA1087264_P_NODE_21742_length_161_cov_0.910714_g21660_i0 PRJNA1087264 21742 161 0.910714 1.46624954 Bufo gargarizans 30331 Chordata Chordata 42 0.0233   NR XP_044145773.1 30331 g21660 i0 45.2 1.41614906832298 42 23 78.3 0 161 36 713 754 XP_044145773.1 ubiquitin carboxyl-terminal hydrolase 13 isoform X1 [Bufo gargarizans] diamond 228 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
27185236 27185236 PRJNA1087264_P_NODE_9742_length_202_cov_1.000000_g9660_i0 PRJNA1087264 9742 202 1 2.02 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.9 1.45e-13   NR OXB69720.1 9014 g9660 i0 53 2.94059405940594 66 31 98 0 2 199 134 199 OXB69720.1 hypothetical protein H355_006454 [Colinus virginianus] diamond 594 74.3 0.994616419919246 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Odontophoridae Colinus Colinus virginianus
27312038 27312038 PRJNA1087264_P_NODE_21923_length_161_cov_0.875000_g21841_i0 PRJNA1087264 21923 161 0.875 1.40875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.5 1.89e-6   NR XP_002121122.3 7719 g21841 i0 46.3 3.91304347826087 54 28 98.8 1 161 3 370 423 XP_002121122.3 acyloxyacyl hydrolase-like [Ciona intestinalis] diamond 630 53.9 0.992578849721707 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27911541 27911541 PRJNA1087264_P_NODE_2705_length_404_cov_2.647887_g2624_i0 PRJNA1087264 2705 404 2.647887 10.69746348 Opisthokonta 33154 Chordata Chordata 113 1.32e-29   NR XP_002130703.1 7719 g2624 i0 58.5 9.31188118811881 106 43 78.7 1 384 67 8 112 XP_002130703.1 40S ribosomal protein S25 [Ciona intestinalis] diamond 3762 113 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
28006737 28006737 PRJNA1087264_P_NODE_12865_length_176_cov_1.204724_g12783_i0 PRJNA1087264 12865 176 1.204724 2.12031424 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.00603   NR XP_039270547.1 7725 g12783 i0 58.3 3.06818181818182 36 15 61.4 0 6 113 1207 1242 XP_039270547.1 helicase SKI2W-like [Styela clava] diamond 540 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
28015210 28015210 PRJNA1087264_P_NODE_15785_length_166_cov_0.871795_g15703_i0 PRJNA1087264 15785 166 0.871795 1.4471797 Alectura lathami 81907 Chordata Chordata 59.3 3.63e-9   NR NXL87597.1 81907 g15703 i0 55.1 25.3915662650602 49 20 88.6 1 154 8 23 69 NXL87597.1 REEP6 protein [Alectura lathami] diamond 4215 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Megapodiidae Alectura Alectura lathami
28299173 28299173 PRJNA1087264_P_NODE_18386_length_164_cov_0.886957_g18304_i0 PRJNA1087264 18386 164 0.886957 1.45460948 Branchiostoma floridae 7739 Chordata Chordata 63.5 5.81e-10   NR XP_035667998.1 7739 g18304 i0 52.7 1.00609756097561 55 25 98.8 1 1 162 3 57 XP_035667998.1 WASH complex subunit 5-like [Branchiostoma floridae] diamond 165 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28353791 28353791 PRJNA1087264_P_NODE_8986_length_210_cov_1.267081_g8904_i0 PRJNA1087264 8986 210 1.267081 2.6608701 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 106 9.84e-26   NR MEE6477090.1 8439 g8904 i0 69 24.0285714285714 71 18 98.6 2 1 207 256 324 MEE6477090.1 hypothetical protein [Ascaphus truei] diamond 5046 106 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
28457260 28457260 PRJNA1087264_P_NODE_7266_length_234_cov_1.102703_g7184_i0 PRJNA1087264 7266 234 1.102703 2.58032502 Petromyzon marinus 7757 Chordata Chordata 97.1 2.63e-21   NR XP_032836785.1 7757 g7184 i0 53.8 1 78 36 100 0 1 234 450 527 XP_032836785.1 arginine--tRNA ligase, cytoplasmic [Petromyzon marinus] diamond 234 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
28835950 28835950 PRJNA1087264_P_NODE_11608_length_185_cov_1.477941_g11526_i0 PRJNA1087264 11608 185 1.477941 2.73419085 Oryctolagus cuniculus 9986 Chordata Chordata 67.8 1.75e-12   NR 3J0L_K 9986 g11526 i0 87.5 0.518918918918919 32 4 51.9 0 89 184 1 32 3J0L_K Chain K, Ribosomal protein S14 [Oryctolagus cuniculus] diamond 96 67.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
29751380 29751380 PRJNA1087264_P_NODE_16571_length_165_cov_1.318966_g16489_i0 PRJNA1087264 16571 165 1.318966 2.1762939 Smutsia gigantea 1559511 Chordata Chordata 55.5 4.15e-7   NR KAK2491121.1 1559511 g16489 i0 45.8 0.872727272727273 48 26 87.3 0 20 163 1044 1091 KAK2491121.1 hypothetical protein MC885_014549, partial [Smutsia gigantea] diamond 144 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Smutsia Smutsia gigantea
29995909 29995909 PRJNA1087264_P_NODE_14111_length_167_cov_1.296610_g14029_i0 PRJNA1087264 14111 167 1.29661 2.1653387 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.7 3.4300000000000004e-21   NR 3J0L_L 9986 g14029 i0 74.5 2.96407185628743 55 14 98.8 0 165 1 11 65 3J0L_L Chain L, Ribosomal protein S23 [Oryctolagus cuniculus] diamond 495 89.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
30248760 30248760 PRJNA1087264_P_NODE_19412_length_163_cov_0.894737_g19330_i0 PRJNA1087264 19412 163 0.894737 1.45842131 Rodentia 9989 Chordata Chordata 78.2 4.07e-15   NR XP_071475206.1 93162 g19330 i0 93.3 3.2760736196319 45 3 82.8 0 135 1 699 743 XP_071475206.1 peptidyl-prolyl cis-trans isomerase G isoform X2 [Marmota flaviventris] diamond 534 78.6 0.994910941475827 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota flaviventris
30889039 30889039 PRJNA1087264_P_NODE_19174_length_163_cov_0.894737_g19092_i0 PRJNA1087264 19174 163 0.894737 1.45842131 Engystomops pustulosus 76066 Chordata Chordata 51.6 5.51e-7   NR KAG8541121.1 76066 g19092 i0 50 0.920245398773006 50 25 92 0 150 1 17 66 KAG8541121.1 hypothetical protein GDO81_029672 [Engystomops pustulosus] diamond 150 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31101462 31101462 PRJNA1087264_P_NODE_9815_length_201_cov_1.171053_g9733_i0 PRJNA1087264 9815 201 1.171053 2.35381653 Polypteridae 8289 Chordata Chordata 93.2 1.02e-20   NR XP_051791274.1 27687 g9733 i0 80.6 9.22388059701493 62 11 91 1 17 199 115 176 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1854 93.2 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31860405 31860405 PRJNA1087264_P_NODE_19797_length_163_cov_0.894737_g19715_i0 PRJNA1087264 19797 163 0.894737 1.45842131 Metazoa 33208 Chordata Chordata 57.8 6.15e-8   NR XP_043914227.1 7888 g19715 i0 85.7 1.03067484662577 28 4 51.5 0 2 85 338 365 XP_043914227.1 glutamine synthetase-like [Protopterus annectens] diamond 168 57.8 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
31923803 31923803 PRJNA1087264_P_NODE_16537_length_165_cov_1.318966_g16455_i0 PRJNA1087264 16537 165 1.318966 2.1762939 Metazoa 33208 Chordata Chordata 44.3 0.00385   NR MEE6509689.1 8439 g16455 i0 39.2 4.65454545454545 51 31 92.7 0 156 4 62 112 MEE6509689.1 hypothetical protein [Ascaphus truei] diamond 768 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32185683 32185683 PRJNA1087264_P_NODE_12478_length_179_cov_1.169231_g12396_i0 PRJNA1087264 12478 179 1.169231 2.09292349 Hypanus sabinus 79690 Chordata Chordata 44.7 0.00334   NR XP_059845894.1 79690 g12396 i0 44.2 5.22905027932961 52 29 87.2 0 174 19 759 810 XP_059845894.1 protein FAM13B-like [Hypanus sabinus] diamond 936 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32303880 32303880 PRJNA1087264_P_NODE_7319_length_233_cov_1.119565_g7237_i0 PRJNA1087264 7319 233 1.119565 2.60858645 Opisthokonta 33154 Chordata Chordata 51.2 2.31e-5   NR KAL1778636.1 42415 g7237 i0 50.9 9.07725321888412 55 26 70.8 1 20 184 96 149 KAL1778636.1 ATP synthase F(0) complex subunit C1, mitochondrial [Sigmodon hispidus] diamond 2115 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Sigmodon Sigmodon hispidus
32525415 32525415 PRJNA1087264_P_NODE_15099_length_167_cov_0.864407_g15017_i0 PRJNA1087264 15099 167 0.864407 1.44355969 root 1 Root_unresolved Root_unresolved 53.9 1.51e-6   NR XP_015454094.1 9402 g15017 i0 46.4 66.3413173652695 56 28 98.8 2 166 2 354 408 XP_015454094.1 transient receptor potential cation channel subfamily A member 1 [Pteropus alecto] diamond 11079 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
32525418 32525418 PRJNA1087264_P_NODE_839_length_728_cov_1.901325_g770_i0 PRJNA1087264 839 728 1.901325 13.841646 Opisthokonta 33154 Chordata Chordata 53.1 2.53e-4   NR XP_019620597.1 7741 g770 i0 38.3 0.902472527472527 94 53 37.9 2 555 280 66 156 XP_019620597.1 PREDICTED: B-cell receptor-associated protein 31-like isoform X2 [Branchiostoma belcheri] diamond 657 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;