RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1087264" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1087264 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10397448 10397448 PRJNA1087264_P_NODE_9089_length_209_cov_1.112500_g9007_i0 PRJNA1087264 9089 209 1.1125 2.325125 Simkania sp. 34094 Bacteria Bacteria 126 4.13e-34   NR MCB1084310.1 34094 g9007 i0 88.4 0.990430622009569 69 8 99 0 1 207 31 99 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 207 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
26814451 26814451 PRJNA1087264_P_NODE_1181_length_612_cov_1.298401_g1107_i0 PRJNA1087264 1181 612 1.298401 7.94621412 Chlamydiales bacterium 2047757 Bacteria Bacteria 62.8 1.19e-7   NR MDF2577680.1 2047757 g1107 i0 28.2 2.00980392156863 216 122 98 6 3 602 145 343 MDF2577680.1 hypothetical protein [Chlamydiales bacterium] diamond 1230 62.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27130320 27130320 PRJNA1087264_P_NODE_15122_length_167_cov_0.864407_g15040_i0 PRJNA1087264 15122 167 0.864407 1.44355969 Parachlamydiales bacterium 2052178 Bacteria Bacteria 42.4 0.0182   NR MFA6916993.1 2052178 g15040 i0 52.5 1.47305389221557 40 19 71.9 0 123 4 201 240 MFA6916993.1 hypothetical protein [Parachlamydiales bacterium] diamond 246 42.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
29656518 29656518 PRJNA1087264_P_NODE_7050_length_238_cov_1.301587_g6968_i0 PRJNA1087264 7050 238 1.301587 3.09777706 Chlamydiales bacterium 2047757 Bacteria Bacteria 45.4 0.00189   NR MCP5470420.1 2047757 g6968 i0 70.4 0.340336134453782 27 8 34 0 1 81 53 79 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 81 45.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;