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contig_metadata

26 rows where analysis = "diamond", bioproject = "PRJNA1087264" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1087264 · 26 ✖

analysis 1

  • diamond · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468626 1468626 PRJNA1087264_P_NODE_12202_length_181_cov_1.159091_g12120_i0 PRJNA1087264 12202 181 1.159091 2.09795471 Arthrobacter 1663 Bacteria Bacteria 95.9 1.07e-22   NR MBO9705187.1 1667 g12120 i0 80 13.6740331491713 60 12 99.4 0 2 181 132 191 MBO9705187.1 SDR family NAD(P)-dependent oxidoreductase [Arthrobacter sp.] diamond 2475 95.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp.
11220874 11220874 PRJNA1087264_P_NODE_3249_length_366_cov_1.624606_g3168_i0 PRJNA1087264 3249 366 1.624606 5.94605796 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 176 4.979999999999999e-54   NR MCP3885490.1 2021380 g3168 i0 70.1 0.959016393442623 117 33 95.9 1 355 5 3 117 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 351 176 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
18045724 18045724 PRJNA1087264_P_NODE_1395_length_566_cov_2.100580_g1319_i0 PRJNA1087264 1395 566 2.10058 11.8892828 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 220 2.16e-70   NR MCP3885490.1 2021380 g1319 i0 71.8 0.789752650176678 149 42 79 0 535 89 3 151 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 447 220 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
25243776 25243776 PRJNA1087264_P_NODE_10960_length_191_cov_1.007042_g10878_i0 PRJNA1087264 10960 191 1.007042 1.92345022 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 107 5.27e-28   NR MCP3885490.1 2021380 g10878 i0 79.4 0.989528795811518 63 13 99 0 190 2 45 107 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 189 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
27067444 27067444 PRJNA1087264_P_NODE_3422_length_355_cov_1.803922_g3341_i0 PRJNA1087264 3422 355 1.803922 6.4039231 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 75.9 1.62e-13   NR MEA2130725.1 2586742 g3341 i0 39.4 1.5887323943662 94 57 79.4 0 355 74 216 309 MEA2130725.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 564 75.9 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
27248603 27248603 PRJNA1087264_P_NODE_9363_length_206_cov_1.210191_g9281_i0 PRJNA1087264 9363 206 1.210191 2.49299346 Bacteria 2 Bacteria Bacteria 45.1 0.00276   NR GAA1886603.1 391736 g9281 i0 37.5 2.76699029126214 48 30 69.9 0 45 188 52 99 GAA1886603.1 hypothetical protein GCM10009773_13650 [Williamsia serinedens] diamond 570 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia serinedens
27627795 27627795 PRJNA1087264_P_NODE_16404_length_166_cov_0.871795_g16322_i0 PRJNA1087264 16404 166 0.871795 1.4471797 Nocardioides 1839 Bacteria Bacteria 95.1 4.19e-21   NR MFA6575476.1 35761 g16322 i0 83.6 2.98192771084337 55 9 99.4 0 165 1 131 185 MFA6575476.1 DnaB-like helicase C-terminal domain-containing protein [Nocardioides sp.] diamond 495 95.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
27731221 27731221 PRJNA1087264_P_NODE_6304_length_254_cov_0.619512_g6222_i0 PRJNA1087264 6304 254 0.619512 1.57356048 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 42.7 0.041   NR HEY3902701.1 2339230 g6222 i0 35.3 0.602362204724409 51 31 57.9 1 19 165 296 346 HEY3902701.1 hypothetical protein [Streptosporangiaceae bacterium] diamond 153 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
27880212 27880212 PRJNA1087264_P_NODE_18905_length_163_cov_1.342105_g18823_i0 PRJNA1087264 18905 163 1.342105 2.18763115 Bacteria 2 Bacteria Bacteria 94.7 5.95e-21   NR MCB1271004.1 2497627 g18823 i0 81.5 21.8650306748466 54 10 99.4 0 163 2 229 282 MCB1271004.1 phosphoenolpyruvate carboxykinase (GTP) [Microthrixaceae bacterium] diamond 3564 95.5 0.991623036649215 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Microthrixaceae   Microthrixaceae bacterium
28172865 28172865 PRJNA1087264_P_NODE_5526_length_272_cov_0.914798_g5444_i0 PRJNA1087264 5526 272 0.914798 2.48825056 Microbacteriaceae bacterium 1873462 Bacteria Bacteria 48.9 1.8e-4   NR MBX9717868.1 1873462 g5444 i0 34.8 0.761029411764706 69 40 70.6 1 27 218 1 69 MBX9717868.1 hypothetical protein [Microbacteriaceae bacterium] diamond 207 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   Microbacteriaceae bacterium
28678301 28678301 PRJNA1087264_P_NODE_8307_length_219_cov_1.141176_g8225_i0 PRJNA1087264 8307 219 1.141176 2.49917544 Conexibacter woesei 191495 Bacteria Bacteria 62 3.98e-9   NR WP_012934830.1 191495 g8225 i0 47 5.41095890410959 66 35 90.4 0 206 9 22 87 WP_012934830.1 ubiquitin family protein [Conexibacter woesei] diamond 1185 62 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei
28732775 28732775 PRJNA1087264_P_NODE_20127_length_162_cov_0.902655_g20045_i0 PRJNA1087264 20127 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 63.9 4.25e-11   NR HEY8406337.1 2838783 g20045 i0 56.6 7.62962962962963 53 23 98.1 0 1 159 56 108 HEY8406337.1 GNAT family N-acetyltransferase [Gaiellaceae bacterium] diamond 1236 63.9 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
29057136 29057136 PRJNA1087264_P_NODE_21728_length_161_cov_0.910714_g21646_i0 PRJNA1087264 21728 161 0.910714 1.46624954 Actinomycetota bacterium 2900548 Bacteria Bacteria 45.8 9.89e-4   NR MDP1878021.1 2900548 g21646 i0 56.8 0.819875776397516 44 18 82 1 30 161 178 220 MDP1878021.1 glycerate kinase [Actinomycetota bacterium] diamond 132 45.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29404378 29404378 PRJNA1087264_P_NODE_11789_length_184_cov_0.851852_g11707_i0 PRJNA1087264 11789 184 0.851852 1.56740768 Micromonospora arida 2203715 Bacteria Bacteria 42.7 0.0173   NR WP_341869921.1 2203715 g11707 i0 52.9 0.554347826086957 34 16 55.4 0 126 25 32 65 WP_341869921.1 HNH endonuclease signature motif containing protein [Micromonospora arida] diamond 102 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora arida
30193789 30193789 PRJNA1087264_P_NODE_16512_length_165_cov_1.422414_g16430_i0 PRJNA1087264 16512 165 1.422414 2.3469831 Rubrobacter sp. 2036010 Bacteria Bacteria 61.2 1.2e-10   NR MEJ7815551.1 2036010 g16430 i0 85.7 0.636363636363636 35 4 61.8 1 105 4 32 66 MEJ7815551.1 hypothetical protein [Rubrobacter sp.] diamond 105 61.2 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
30257431 30257431 PRJNA1087264_P_NODE_2472_length_426_cov_1.175066_g2391_i0 PRJNA1087264 2472 426 1.175066 5.00578116 Solirubrobacter deserti 2282478 Bacteria Bacteria 45.8 0.0181   NR WP_202957815.1 2282478 g2391 i0 35 0.704225352112676 100 48 65.5 4 286 8 257 346 WP_202957815.1 MFS transporter [Solirubrobacter deserti] diamond 300 45.8 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Solirubrobacter deserti
30352428 30352428 PRJNA1087264_P_NODE_8932_length_211_cov_0.759259_g8850_i0 PRJNA1087264 8932 211 0.759259 1.60203649 Nocardioides sp. AX2bis 2653157 Bacteria Bacteria 44.3 0.00663   NR WP_160006012.1 2653157 g8850 i0 44.8 0.824644549763033 58 25 76.8 3 46 207 158 212 WP_160006012.1 GNAT family N-acetyltransferase [Nocardioides sp. AX2bis] diamond 174 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. AX2bis
30352429 30352429 PRJNA1087264_P_NODE_972_length_673_cov_1.705128_g902_i0 PRJNA1087264 972 673 1.705128 11.47551144 uncultured Actinomycetospora sp. 1135996 Bacteria Bacteria 44.3 0.0263   NR CAA9243484.1 1135996 g902 i0 46.8 0.343239227340267 77 33 31.2 3 88 297 7 82 CAA9243484.1 MAG: WhiB-like transcription regulator, partial [uncultured Actinomycetospora sp.] diamond 231 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora uncultured Actinomycetospora sp.
30509834 30509834 PRJNA1087264_P_NODE_19233_length_163_cov_0.894737_g19151_i0 PRJNA1087264 19233 163 0.894737 1.45842131 Fodinicola feengrottensis 435914 Bacteria Bacteria 42 0.00275   NR WP_344307536.1 435914 g19151 i0 45.9 0.680981595092024 37 20 68.1 0 159 49 19 55 WP_344307536.1 hypothetical protein [Fodinicola feengrottensis] diamond 111 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales   Fodinicola Fodinicola feengrottensis
31132906 31132906 PRJNA1087264_P_NODE_10655_length_193_cov_1.784722_g10573_i0 PRJNA1087264 10655 193 1.784722 3.44451346 Bacteria 2 Bacteria Bacteria 42.7 0.0184   NR WP_172461504.1 672460 g10573 i0 60 4.15025906735751 30 12 46.6 0 3 92 310 339 WP_172461504.1 alcohol dehydrogenase AdhP [Branchiibius hedensis] diamond 801 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Branchiibius Branchiibius hedensis
31553142 31553142 PRJNA1087264_P_NODE_18756_length_164_cov_0.886957_g18674_i0 PRJNA1087264 18756 164 0.886957 1.45460948 Frankia umida 573489 Bacteria Bacteria 45.4 0.00142   NR WP_248827075.1 573489 g18674 i0 56.3 0.585365853658537 32 14 58.5 0 152 57 308 339 WP_248827075.1 hypothetical protein [Frankia umida] diamond 96 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia umida
32058979 32058979 PRJNA1087264_P_NODE_18678_length_164_cov_0.886957_g18596_i0 PRJNA1087264 18678 164 0.886957 1.45460948 Nesterenkonia lacusekhoensis 150832 Bacteria Bacteria 107 2.12e-25   NR WP_210048060.1 150832 g18596 i0 100 0.98780487804878 54 0 98.8 0 164 3 282 335 WP_210048060.1 HelD family protein [Nesterenkonia lacusekhoensis] diamond 162 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia lacusekhoensis
32280740 32280740 PRJNA1087264_P_NODE_19179_length_163_cov_0.894737_g19097_i0 PRJNA1087264 19179 163 0.894737 1.45842131 Micrococcus sp. NPDC 1271 Bacteria Bacteria 70.5 2.03e-12   NR WP_366370635.1 3154960 g19097 i0 100 1.25153374233129 34 0 62.6 0 163 62 134 167 WP_366370635.1 hypothetical protein [Micrococcus sp. NPDC078436] diamond 204 70.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. NPDC078436
32367025 32367025 PRJNA1087264_P_NODE_19699_length_163_cov_0.894737_g19617_i0 PRJNA1087264 19699 163 0.894737 1.45842131 Bacillati 1783272 Bacteria Bacteria 51.6 9.19e-6   NR WP_168115718.1 689768 g19617 i0 45.1 1.85889570552147 51 28 93.9 0 2 154 261 311 WP_168115718.1 aldo/keto reductase [Planosporangium mesophilum] diamond 303 52 0.992307692307692 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Planosporangium Planosporangium mesophilum
32461860 32461860 PRJNA1087264_P_NODE_6459_length_250_cov_1.268657_g6377_i0 PRJNA1087264 6459 250 1.268657 3.1716425 Streptomyces 1883 Bacteria Bacteria 60.5 2.41e-8   NR WP_345667937.1 1274988 g6377 i0 42.1 3.66 76 44 91.2 0 228 1 608 683 WP_345667937.1 amino acid adenylation domain-containing protein [Streptomyces similanensis] diamond 915 60.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces similanensis
32871603 32871603 PRJNA1087264_P_NODE_6340_length_253_cov_0.906863_g6258_i0 PRJNA1087264 6340 253 0.906863 2.29436339 Streptomyces 1883 Bacteria Bacteria 42.7 0.00988   NR WP_059042734.1 42234 g6258 i0 35.7 2.09881422924901 56 35 66.4 1 252 85 4 58 WP_059042734.1 hypothetical protein [Streptomyces acidiscabies] diamond 531 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces acidiscabies

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;