RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA1086823" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1086823 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6571642 6571642 PRJNA1086823_P_NODE_16946_length_245_cov_0.906977_g16829_i0 PRJNA1086823 16946 245 0.906977 2.22209365 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.5 1.08e-13   NR HXG69990.1 2026741 g16829 i0 51.5 0.83265306122449 68 33 83.3 0 30 233 1 68 HXG69990.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 204 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27699661 27699661 PRJNA1086823_P_NODE_13004_length_252_cov_0.871508_g12887_i0 PRJNA1086823 13004 252 0.871508 2.19620016 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 160 1.5599999999999998e-45   NR HSE28238.1 2448054 g12887 i0 95.2 1 84 4 100 0 252 1 16 99 HSE28238.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Gemmatimonadales bacterium] diamond 252 160 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27699666 27699666 PRJNA1086823_P_NODE_5604_length_340_cov_1.168539_g5487_i0 PRJNA1086823 5604 340 1.168539 3.9730326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.5 4.6e-14   NR HXG69993.1 2026741 g5487 i0 55.6 0.635294117647059 72 32 63.5 0 340 125 132 203 HXG69993.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 216 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28078129 28078129 PRJNA1086823_P_NODE_16585_length_246_cov_0.901734_g16468_i0 PRJNA1086823 16585 246 0.901734 2.21826564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 82.8 3.16e-16   NR HVE79799.1 2026741 g16468 i0 51.1 5.30487804878049 88 33 95.1 2 1 234 893 980 HVE79799.1 TonB-dependent receptor [Gemmatimonadaceae bacterium] diamond 1305 82.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28172846 28172846 PRJNA1086823_P_NODE_11626_length_256_cov_1.704918_g11509_i0 PRJNA1086823 11626 256 1.704918 4.36459008 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 42.7 0.045   NR CAA9295630.1 246130 g11509 i0 37.5 1.125 96 48 98.4 2 5 256 56 151 CAA9295630.1 MAG: Excinuclease ABC subunit A, partial [uncultured Gemmatimonadaceae bacterium] diamond 288 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
28330724 28330724 PRJNA1086823_P_NODE_14026_length_250_cov_0.881356_g13909_i0 PRJNA1086823 14026 250 0.881356 2.20339 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 103 1.6299999999999994e-23   NR NNF13398.1 2026742 g13909 i0 57.8 0.996 83 35 99.6 0 249 1 375 457 NNF13398.1 AsmA family protein [Gemmatimonadota bacterium] diamond 249 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28732771 28732771 PRJNA1086823_P_NODE_10147_length_271_cov_1.525253_g10030_i0 PRJNA1086823 10147 271 1.525253 4.13343563 Gemmatimonadaceae 219687 Bacteria Bacteria 97.8 2.33e-21   NR WP_025410860.1 861299 g10030 i0 62.5 4.4169741697417 80 27 88.6 1 270 31 941 1017 WP_025410860.1 SusC/RagA family TonB-linked outer membrane protein [Gemmatirosa kalamazoonensis] diamond 1197 98.6 0.991886409736308 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
29057125 29057125 PRJNA1086823_P_NODE_13708_length_251_cov_0.876404_g13591_i0 PRJNA1086823 13708 251 0.876404 2.19977404 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 156 7.48e-44   NR HZE94286.1 2448054 g13591 i0 89.2 4.9601593625498 83 9 99.2 0 251 3 119 201 HZE94286.1 NAD-binding protein [Gemmatimonadales bacterium] diamond 1245 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29152098 29152098 PRJNA1086823_P_NODE_13769_length_251_cov_0.865169_g13652_i0 PRJNA1086823 13769 251 0.865169 2.17157419 Longimicrobiales bacterium 2910168 Bacteria Bacteria 94.7 7.149999999999999e-23   NR HUF50634.1 2910168 g13652 i0 48.1 1.60159362549801 81 41 96.8 1 9 251 5 84 HUF50634.1 BrnA antitoxin family protein [Longimicrobiales bacterium] diamond 402 94.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
30289057 30289057 PRJNA1086823_P_NODE_16172_length_247_cov_0.896552_g16055_i0 PRJNA1086823 16172 247 0.896552 2.21448344 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.1 0.006   NR MFN8653765.1 2448054 g16055 i0 45.8 1.0080971659919 83 37 91.1 4 5 229 220 302 MFN8653765.1 hypothetical protein [Gemmatimonadales bacterium] diamond 249 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31268242 31268242 PRJNA1086823_P_NODE_3575_length_410_cov_2.097923_g3458_i0 PRJNA1086823 3575 410 2.097923 8.6014843 Longimicrobium sp. 2029185 Bacteria Bacteria 47.4 0.00264   NR WP_331072372.1 2029185 g3458 i0 28 0.6 82 52 60 1 5 250 94 168 WP_331072372.1 3'-5' exonuclease [Longimicrobium sp.] diamond 246 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;