RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1086823" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1086823 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28425653 28425653 PRJNA1086823_P_NODE_14386_length_249_cov_1.795455_g14269_i0 PRJNA1086823 14386 249 1.795455 4.47068295 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 106 4.4900000000000006e-27   NR CEO99768.1 37360 g14269 i0 65.2 1.66265060240964 69 24 83.1 0 40 246 1 69 CEO99768.1 hypothetical protein PBRA_007502 [Plasmodiophora brassicae] diamond 414 106 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29941318 29941318 PRJNA1086823_P_NODE_17211_length_245_cov_0.906977_g17094_i0 PRJNA1086823 17211 245 0.906977 2.22209365 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00289   NR CEP03344.1 37360 g17094 i0 76 0.306122448979592 25 6 30.6 0 243 169 166 190 CEP03344.1 hypothetical protein PBRA_003104 [Plasmodiophora brassicae] diamond 75 45.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30406835 30406835 PRJNA1086823_P_NODE_1933_length_537_cov_5.573276_g1817_i0 PRJNA1086823 1933 537 5.573276 29.92849212 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 177 5.18e-53   NR CEP02281.1 37360 g1817 i0 57.4 9.97765363128492 176 72 98.3 2 528 1 1 173 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 5358 177 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;