RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1086823" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1086823 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27880210 27880210 PRJNA1086823_P_NODE_5185_length_350_cov_1.689531_g5068_i0 PRJNA1086823 5185 350 1.689531 5.9133585 Metazoa 33208 Chordata Chordata 125 3.94e-34   NR XP_055515816.1 7782 g5068 i0 65.1 41.1085714285714 109 38 93.4 0 348 22 40 148 XP_055515816.1 60S ribosomal protein L35 [Leucoraja erinaceus] diamond 14388 125 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
28046608 28046608 PRJNA1086823_P_NODE_17125_length_245_cov_0.906977_g17008_i0 PRJNA1086823 17125 245 0.906977 2.22209365 Grallaria varia 117165 Chordata Chordata 77.8 5.56e-16   NR NXG13372.1 117165 g17008 i0 45.1 3.95510204081633 82 44 99.2 1 243 1 54 135 NXG13372.1 GLRX2 protein [Grallaria varia] diamond 969 77.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Formicariidae Grallaria Grallaria varia
28890451 28890451 PRJNA1086823_P_NODE_17808_length_244_cov_0.912281_g17691_i0 PRJNA1086823 17808 244 0.912281 2.22596564 Aves 8782 Chordata Chordata 136 1.05e-36   NR XP_057262507.1 35540 g17691 i0 92.2 16.7704918032787 77 6 94.7 0 242 12 180 256 XP_057262507.1 putative RNA-binding protein Luc7-like 1 isoform X3 [Pezoporus wallicus] diamond 4092 136 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Pezoporus Pezoporus wallicus
30375340 30375340 PRJNA1086823_P_NODE_11312_length_259_cov_2.263441_g11195_i0 PRJNA1086823 11312 259 2.263441 5.86231219 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 74.3 3.42e-13   NR XP_019620313.1 7741 g11195 i0 49.3 14.7220077220077 71 36 82.2 0 257 45 1327 1397 XP_019620313.1 PREDICTED: multidrug resistance-associated protein 5-like [Branchiostoma belcheri] diamond 3813 74.7 0.994645247657296 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30880369 30880369 PRJNA1086823_P_NODE_1714_length_568_cov_1.197980_g1599_i0 PRJNA1086823 1714 568 1.19798 6.8045264 Chordata 7711 Chordata Chordata 185 2.82e-52   NR NP_033640.1 7748 g1599 i0 80.8 404.989436619718 120 23 63.4 0 519 160 276 395 NP_033640.1 cytochrome c oxidase subunit I [Lampetra fluviatilis] diamond 230034 186 0.99462365591397806 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
31070187 31070187 PRJNA1086823_P_NODE_7975_length_293_cov_1.240909_g7858_i0 PRJNA1086823 7975 293 1.240909 3.63586337 Opisthokonta 33154 Chordata Chordata 53.1 2.38e-6   NR XP_019623135.1 7741 g7858 i0 35.8 1.80204778156997 95 51 94.2 5 18 293 2 89 XP_019623135.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like isoform X2 [Branchiostoma belcheri] diamond 528 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;