RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1086823" and tax_clade = "Metamonada"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1086823 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27185233 27185233 PRJNA1086823_P_NODE_7582_length_299_cov_4.929204_g7465_i0 PRJNA1086823 7582 299 4.929204 14.73831996 root 1 Root_unresolved Root_unresolved 113 2.8699999999999997e-30   NR KAA6379614.1 222440 g7465 i0 58.1 3.59197324414716 93 39 93.3 0 2 280 1 93 KAA6379614.1 MAG: hypothetical protein EZS28_024857 [Streblomastix strix] diamond 1074 113 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
29814701 29814701 PRJNA1086823_P_NODE_1771_length_558_cov_4.321649_g1656_i0 PRJNA1086823 1771 558 4.321649 24.11480142 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.34e-61   NR XP_068360038.1 1144522 g1656 i0 57.2 7.48387096774194 173 74 93 0 27 545 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4176 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32312445 32312445 PRJNA1086823_P_NODE_6179_length_327_cov_1.173228_g6062_i0 PRJNA1086823 6179 327 1.173228 3.83645556 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 42.4 0.028   NR XP_067762115.1 348837 g6062 i0 38.5 0.477064220183486 52 31 47.7 1 127 282 45 95 XP_067762115.1 Dynein light chain [Spironucleus salmonicida] diamond 156 42.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;