RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1086823" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1086823 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193863 193863 PRJNA1086823_P_NODE_4981_length_357_cov_1.070423_g4864_i0 PRJNA1086823 4981 357 1.070423 3.82141011 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 174 3.34e-50   NR PRP84143.1 1890364 g4864 i0 75.2 20.2100840336134 109 27 91.6 0 30 356 280 388 PRP84143.1 hypothetical protein PROFUN_04134 [Planoprotostelium fungivorum] diamond 7215 174 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
25243768 25243768 PRJNA1086823_P_NODE_8380_length_289_cov_1.083333_g8263_i0 PRJNA1086823 8380 289 1.083333 3.13083237 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 159 2.35e-48   NR XP_004339588.1 1257118 g8263 i0 90.7 1.78546712802768 86 8 89.3 0 31 288 5 90 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 516 159 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27312037 27312037 PRJNA1086823_P_NODE_12783_length_252_cov_0.871508_g12666_i0 PRJNA1086823 12783 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.9 8.340000000000001e-21   NR XP_004359899.1 261658 g12666 i0 51.8 1.97619047619048 83 39 98.8 1 251 3 861 942 XP_004359899.1 Acyloxyacyl hydrolase [Cavenderia fasciculata] diamond 498 95.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27406863 27406863 PRJNA1086823_P_NODE_15323_length_248_cov_0.891429_g15206_i0 PRJNA1086823 15323 248 0.891429 2.21074392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.3 7.68e-19   NR KYR01223.1 361077 g15206 i0 50 2.46774193548387 72 36 87.1 0 3 218 45 116 KYR01223.1 GTP-binding protein Sar1A [Tieghemostelium lacteum] diamond 612 86.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
27573035 27573035 PRJNA1086823_P_NODE_8244_length_290_cov_1.313364_g8127_i0 PRJNA1086823 8244 290 1.313364 3.8087556 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 99.4 1.02e-24   NR KAH3756107.1 1580589 g8127 i0 52.6 0.786206896551724 76 36 78.6 0 45 272 19 94 KAH3756107.1 hypothetical protein Pelo_12095 [Pelomyxa schiedti] diamond 228 99.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28267474 28267474 PRJNA1086823_P_NODE_1306_length_655_cov_1.594502_g1193_i0 PRJNA1086823 1306 655 1.594502 10.4439881 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 303 1.3899999999999998e-99   NR XP_004353078.1 1257118 g1193 i0 68.2 2.97709923664122 217 68 99.4 1 3 653 136 351 XP_004353078.1 meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str. Neff] diamond 1950 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30920777 30920777 PRJNA1086823_P_NODE_12354_length_253_cov_0.866667_g12237_i0 PRJNA1086823 12354 253 0.866667 2.19266751 Cavenderia fasciculata 261658 Evosea other_Eukaryota 102 7.85e-24   NR XP_004350112.1 261658 g12237 i0 61.9 0.99604743083004 84 31 99.6 1 1 252 176 258 XP_004350112.1 severin [Cavenderia fasciculata] diamond 252 102 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;