RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1085664" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1085664 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29846385 29846385 PRJNA1085664_S_NODE_21751_length_188_cov_0.889655_g21332_i0 PRJNA1085664 21751 188 0.889655 1.6725514 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.7 0.0117   NR HEX2036551.1 2026724 g21332 i0 42.6 0.861702127659574 54 31 86.2 0 15 176 10 63 HEX2036551.1 pyridoxal-phosphate dependent enzyme [Chloroflexota bacterium] diamond 162 42.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30983955 30983955 PRJNA1085664_S_NODE_23134_length_182_cov_3.575540_g22715_i0 PRJNA1085664 23134 182 3.57554 6.5074828 Anaerolineales bacterium 2073117 Bacteria Bacteria 43.5 0.00841   NR HET9588558.1 2073117 g22715 i0 41.7 0.791208791208791 48 28 79.1 0 22 165 136 183 HET9588558.1 ABC-2 family transporter protein [Anaerolineales bacterium] diamond 144 43.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;