RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1082072" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1082072 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30415404 30415404 PRJNA1082072_P_NODE_2513_length_246_cov_0.890173_g2506_i0 PRJNA1082072 2513 246 0.890173 2.18982558 Opitutia bacterium 2026771 Bacteria Bacteria 42.4 0.0407   NR MFM9001903.1 2026771 g2506 i0 34.9 0.768292682926829 63 36 70.7 1 176 3 116 178 MFM9001903.1 hypothetical protein [Opitutia bacterium] diamond 189 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
30415405 30415405 PRJNA1082072_P_NODE_2973_length_241_cov_0.916667_g2966_i0 PRJNA1082072 2973 241 0.916667 2.20916747 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.1 2.87e-8   NR MBN8246635.1 2026799 g2966 i0 33.3 3.4356846473029 60 40 74.7 0 241 62 753 812 MBN8246635.1 preprotein translocase subunit SecA [Verrucomicrobiota bacterium] diamond 828 60.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31805869 31805869 PRJNA1082072_P_NODE_1137_length_324_cov_2.091633_g1130_i0 PRJNA1082072 1137 324 2.091633 6.77689092 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 85.9 7.16e-17   NR MBN2505827.1 2026799 g1130 i0 45 2.83333333333333 111 50 98.1 4 320 3 416 520 MBN2505827.1 HYR domain-containing protein [Verrucomicrobiota bacterium] diamond 918 85.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;