RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1082072" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1082072 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27248599 27248599 PRJNA1082072_P_NODE_1243_length_310_cov_1.299578_g1236_i0 PRJNA1082072 1243 310 1.299578 4.0286918 Pseudomonadati 3379134 Bacteria Bacteria 83.2 6.99e-17   NR MDB4893677.1 2026742 g1236 i0 45.7 3.80322580645161 105 49 95.8 2 14 310 15 117 MDB4893677.1 Endonuclease [Gemmatimonadota bacterium] diamond 1179 84 0.990476190476191 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31417757 31417757 PRJNA1082072_P_NODE_1716_length_274_cov_1.532338_g1709_i0 PRJNA1082072 1716 274 1.532338 4.19860612 FCB group 1783270 Bacteria Bacteria 58.9 1.04e-7   NR HXS24123.1 2448054 g1709 i0 42.7 1.57664233576642 75 39 82.1 1 239 15 162 232 HXS24123.1 vanadium-dependent haloperoxidase [Gemmatimonadales bacterium] diamond 432 59.3 0.993254637436762 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32880094 32880094 PRJNA1082072_P_NODE_1140_length_324_cov_1.227092_g1133_i0 PRJNA1082072 1140 324 1.227092 3.97577808 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 138 1.3e-35   NR NNE08319.1 2026742 g1133 i0 55.1 0.990740740740741 107 46 99.1 1 3 323 222 326 NNE08319.1 T9SS type A sorting domain-containing protein [Gemmatimonadota bacterium] diamond 321 138 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;