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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA1078753" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1467041 1467041 PRJNA1078753_P_NODE_13642_length_317_cov_3.848361_g13446_i0 PRJNA1078753 13642 317 3.848361 12.19930437 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 147 8.09e-40   NR BAN33737.1 931554 g13446 i0 76.9 6.95583596214511 91 21 86.1 0 274 2 4 94 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 2205 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
4845100 4845100 PRJNA1078753_P_NODE_544_length_1224_cov_8.031277_g428_i0 PRJNA1078753 544 1224 8.031277 98.30283048 Amoeba proteus 5775 Tubulinea other_Eukaryota 627 1.2399999999999995e-223   NR AAP88974.1 5775 g428 i0 77.7 0.958333333333333 391 85 95.8 1 1218 46 1 389 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1173 627 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
6570474 6570474 PRJNA1078753_P_NODE_246_length_1608_cov_25.195440_g187_i0 PRJNA1078753 246 1608 25.19544 405.1426752 Copromyxa protea 931554 Tubulinea other_Eukaryota 769 1.6900000000000002e-276   NR BAN33737.1 931554 g187 i0 81.3 3.42164179104478 464 81 85.4 1 44 1417 1 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 5502 769 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
11671213 11671213 PRJNA1078753_P_NODE_250_length_1602_cov_26.559843_g187_i1 PRJNA1078753 250 1602 26.559843 425.48868486 Copromyxa protea 931554 Tubulinea other_Eukaryota 769 1.1e-276   NR BAN33737.1 931554 g187 i1 81.3 3.43445692883895 464 81 85.8 1 38 1411 1 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 5502 769 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
11671394 11671394 PRJNA1078753_P_NODE_6330_length_425_cov_2.184659_g6134_i0 PRJNA1078753 6330 425 2.184659 9.28480075 Amoeba proteus 5775 Tubulinea other_Eukaryota 179 4.79e-49   NR AAD33718.1 5775 g6134 i0 65.3 1.01647058823529 144 45 98.8 3 5 424 59 201 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 432 179 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
19318207 19318207 PRJNA1078753_P_NODE_19796_length_279_cov_1.495146_g19600_i0 PRJNA1078753 19796 279 1.495146 4.17145734 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 94.7 2.01e-20   NR AEA30120.1 5778 g19600 i0 51.1 0.989247311827957 92 40 98.9 2 3 278 150 236 AEA30120.1 glucosamine-6-phosphate isomerase, partial [Vermamoeba vermiformis] diamond 276 94.7 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20593764 20593764 PRJNA1078753_P_NODE_9197_length_366_cov_3.143345_g9001_i0 PRJNA1078753 9197 366 3.143345 11.5046427 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 218 3.84e-69   NR ACA04822.1 497998 g9001 i0 85.1 0.991803278688525 121 18 99.2 0 2 364 70 190 ACA04822.1 alpha-tubulin, partial [Arcella hemisphaerica] diamond 363 218 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
27121818 27121818 PRJNA1078753_P_NODE_23802_length_263_cov_1.621053_g23606_i0 PRJNA1078753 23802 263 1.621053 4.26336939 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 83.2 1.7e-16   NR AAY34140.1 5778 g23606 i0 53.5 2.92015209125475 86 39 98.1 1 260 3 38 122 AAY34140.1 Nop58p, partial [Vermamoeba vermiformis] diamond 768 83.6 0.995215311004785 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27636260 27636260 PRJNA1078753_P_NODE_10664_length_347_cov_4.014599_g10468_i0 PRJNA1078753 10664 347 4.014599 13.93065853 Amoeba proteus 5775 Tubulinea other_Eukaryota 150 3.4e-41   NR AAD37351.1 5775 g10468 i0 66.1 1.02017291066282 118 36 98.6 2 2 343 93 210 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 354 150 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28962488 28962488 PRJNA1078753_P_NODE_2868_length_591_cov_2.594595_g2676_i0 PRJNA1078753 2868 591 2.594595 15.33405645 Amoeba proteus 5775 Tubulinea other_Eukaryota 246 2.21e-71   NR AAD33718.1 5775 g2676 i0 66.2 0.989847715736041 195 65 98.5 1 587 6 680 874 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 585 246 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
29751320 29751320 PRJNA1078753_P_NODE_1971_length_697_cov_2.911859_g1791_i0 PRJNA1078753 1971 697 2.911859 20.29565723 Amoeba proteus 5775 Tubulinea other_Eukaryota 223 5.39e-63   NR AAD33718.1 5775 g1791 i0 53.6 1.01147776183644 235 98 99.9 5 2 697 188 414 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 705 223 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30035941 30035941 PRJNA1078753_P_NODE_4731_length_480_cov_1.444717_g4535_i0 PRJNA1078753 4731 480 1.444717 6.9346416 Amoeba proteus 5775 Tubulinea other_Eukaryota 100 4.9900000000000006e-21   NR AAD33718.1 5775 g4535 i0 40.9 0.9625 154 67 95.6 5 2 460 539 669 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 462 100 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30130300 30130300 PRJNA1078753_P_NODE_22452_length_268_cov_2.333333_g22256_i0 PRJNA1078753 22452 268 2.333333 6.25333244 Nolandella sp. LAK-2 1908693 Tubulinea other_Eukaryota 128 2.16e-34   NR AFX73095.1 1260117 g22256 i0 71.3 4.83582089552239 87 25 97.4 0 3 263 20 106 AFX73095.1 elongation factor 2 alpha, partial [Nolandella sp. LAK-2012] diamond 1296 128 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
30762645 30762645 PRJNA1078753_P_NODE_20454_length_276_cov_2.630542_g20258_i0 PRJNA1078753 20454 276 2.630542 7.26029592 Amoeba proteus 5775 Tubulinea other_Eukaryota 142 3.789999999999999e-37   NR ABD16178.1 5775 g20258 i0 77.8 0.880434782608696 81 18 88 0 250 8 4 84 ABD16178.1 110 kDa actin binding protein interacting with anti-filamin antibody [Amoeba proteus] diamond 243 142 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30888970 30888970 PRJNA1078753_P_NODE_10854_length_345_cov_1.974265_g10658_i0 PRJNA1078753 10854 345 1.974265 6.81121425 Amoeba proteus 5775 Tubulinea other_Eukaryota 177 1.2399999999999999e-52   NR AFX84537.1 5775 g10658 i0 72.8 0.991304347826087 114 31 99.1 0 2 343 156 269 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 342 177 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32249173 32249173 PRJNA1078753_P_NODE_7458_length_397_cov_1.657407_g7262_i0 PRJNA1078753 7458 397 1.657407 6.57990579 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 115 1.1599999999999999e-28   NR AAY21191.1 5778 g7262 i0 61.6 1.49622166246851 99 38 74.8 0 397 101 148 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 594 115 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32533807 32533807 PRJNA1078753_P_NODE_8919_length_371_cov_1.033557_g8723_i0 PRJNA1078753 8919 371 1.033557 3.83449647 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 108 1.2e-27   NR ABD72565.1 5778 g8723 i0 64.6 0.638814016172507 79 28 63.9 0 237 1 1 79 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 237 108 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;