RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1078753" and tax_phylum = "Nematomorpha"

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tax_superkingdom 1

tax_phylum 1

  • Nematomorpha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29593324 29593324 PRJNA1078753_P_NODE_14430_length_311_cov_1.294118_g14234_i0 PRJNA1078753 14430 311 1.294118 4.02470698 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 43.5 0.0428   NR CAK9297776.1 3053472 g14234 i0 37.3 0.569131832797428 59 37 56.9 0 73 249 213 271 CAK9297776.1 unnamed protein product [Gordionus sp. m RMFG-2023] diamond 177 43.5 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
29972671 29972671 PRJNA1078753_P_NODE_35191_length_246_cov_0.890173_g34995_i0 PRJNA1078753 35191 246 0.890173 2.18982558 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 55.8 9.48e-7   NR XP_065314532.1 3053472 g34995 i0 34.2 0.926829268292683 76 50 92.7 0 4 231 542 617 XP_065314532.1 ATP-dependent RNA helicase DDX25-like isoform X2 [Gordionus sp. m RMFG-2023] diamond 228 55.8 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023
32343997 32343997 PRJNA1078753_P_NODE_4559_length_487_cov_2.410628_g4363_i0 PRJNA1078753 4559 487 2.410628 11.73975836 Gordionus sp. m RMFG-2 3053472 Nematomorpha other_Eukaryota 81.3 1.78e-16   NR XP_065325209.1 3053472 g4363 i0 38.1 0.696098562628337 113 70 69.6 0 450 112 1 113 XP_065325209.1 large ribosomal subunit protein P2-like [Gordionus sp. m RMFG-2023] diamond 339 81.3 1 Eukaryota Opisthokonta Metazoa Nematomorpha Gordioida Chordodea Parachordodidae Gordionus Gordionus sp. m RMFG-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;