RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27352156 27352156 PRJNA1074408_S_NODE_8763_length_159_cov_1.655172_g8633_i0 PRJNA1074408 8763 159 1.655172 2.63172348 Trichuris trichiura 36087 Nematoda Nematoda 75.1 1.32e-14   NR CDW54364.1 36087 g8633 i0 55.1 0.924528301886792 49 22 92.5 0 159 13 170 218 CDW54364.1 26S proteasome non ATPase regulatory subunit 10 [Trichuris trichiura] diamond 147 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
28109583 28109583 PRJNA1074408_S_NODE_7225_length_174_cov_2.198473_g7095_i0 PRJNA1074408 7225 174 2.198473 3.82534302 Soboliphyme baturini 241478 Nematoda Nematoda 97.1 2.85e-24   NR VDP04425.1 241478 g7095 i0 91.1 0.96551724137931 56 5 96.6 0 6 173 39 94 VDP04425.1 unnamed protein product [Soboliphyme baturini] diamond 168 97.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28330672 28330672 PRJNA1074408_S_NODE_2346_length_299_cov_1.382812_g2216_i0 PRJNA1074408 2346 299 1.382812 4.13460788 Trichuris trichiura 36087 Nematoda Nematoda 132 4.22e-37   NR CDW53661.1 36087 g2216 i0 78.5 0.792642140468227 79 17 79.3 0 293 57 69 147 CDW53661.1 Heme transporter hrg1 B [Trichuris trichiura] diamond 237 132 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;