RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27722740 27722740 PRJNA1074408_S_NODE_6884_length_178_cov_1.422222_g6754_i0 PRJNA1074408 6884 178 1.422222 2.53155516 Bacteroidota 976 Bacteria Bacteria 50.1 4.15e-5   NR MEY4964061.1 1898104 g6754 i0 39.7 7.2977528089887604 58 34 97.8 1 174 1 1104 1160 MEY4964061.1 hypothetical protein [Bacteroidota bacterium] diamond 1299 50.4 0.994047619047619 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
32249133 32249133 PRJNA1074408_S_NODE_7158_length_175_cov_1.446970_g7028_i0 PRJNA1074408 7158 175 1.44697 2.5321975 uncultured Chryseobacterium sp. 259322 Bacteria Bacteria 81.3 8.59e-17   NR WP_288447028.1 259322 g7028 i0 69 0.994285714285714 58 17 99.4 1 1 174 6 62 WP_288447028.1 hypothetical protein [uncultured Chryseobacterium sp.] diamond 174 81.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium uncultured Chryseobacterium sp.
32470494 32470494 PRJNA1074408_S_NODE_5479_length_198_cov_1.238710_g5349_i0 PRJNA1074408 5479 198 1.23871 2.4526458 Cytophaga hutchinsonii 985 Bacteria Bacteria 95.1 6.4500000000000005e-21   NR WP_041932320.1 985 g5349 i0 75 0.96969696969697 64 16 97 0 197 6 21 84 WP_041932320.1 tetratricopeptide repeat protein [Cytophaga hutchinsonii] diamond 192 95.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Cytophaga Cytophaga hutchinsonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;