RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074408 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31481345 31481345 PRJNA1074408_S_NODE_6716_length_180_cov_1.401460_g6586_i0 PRJNA1074408 6716 180 1.40146 2.522628 Eubacteriales 186802 Bacteria Bacteria 69.3 4.43e-12   NR MCI6244609.1 142586 g6586 i0 58 5 50 21 83.3 0 1 150 218 267 MCI6244609.1 L-lactate dehydrogenase [Eubacterium sp.] diamond 900 69.7 0.994261119081779 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp.
31963935 31963935 PRJNA1074408_S_NODE_2178_length_308_cov_3.603774_g2048_i0 PRJNA1074408 2178 308 3.603774 11.09962392 Veillonella sp. 1926307 Bacteria Bacteria 152 9.71e-46   NR WP_366512514.1 1926307 g2048 i0 75.5 1.83116883116883 94 23 91.6 0 27 308 1 94 WP_366512514.1 hypothetical protein [Veillonella sp.] diamond 564 152 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;