RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4017533 4017533 PRJNA1074408_S_NODE_5844_length_192_cov_2.255034_g5714_i0 PRJNA1074408 5844 192 2.255034 4.32966528 Oedothorax gibbosus 931172 Arthropoda Arthropoda 78.6 4.18e-15   NR KAG8186595.1 931172 g5714 i0 80.5 1.296875 41 8 64.1 0 184 62 430 470 KAG8186595.1 hypothetical protein JTE90_019917 [Oedothorax gibbosus] diamond 249 78.6 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Linyphiidae Oedothorax Oedothorax gibbosus
31164464 31164464 PRJNA1074408_S_NODE_4855_length_210_cov_2.011976_g4725_i0 PRJNA1074408 4855 210 2.011976 4.2251496 Trichogramma 7490 Arthropoda Arthropoda 48.1 2.99e-4   NR KAL3385824.1 54128 g4725 i0 50 2.64285714285714 50 21 71.4 1 61 210 290 335 KAL3385824.1 hypothetical protein TKK_018624 [Trichogramma kaykai] diamond 555 48.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Trichogrammatidae Trichogramma Trichogramma kaykai
32280657 32280657 PRJNA1074408_S_NODE_9879_length_151_cov_1.333333_g9749_i0 PRJNA1074408 9879 151 1.333333 2.01333283 Diuraphis noxia 143948 Arthropoda Arthropoda 85.5 9.11e-18   NR XP_015373264.1 143948 g9749 i0 80 1.98675496688742 50 10 99.3 0 151 2 256 305 XP_015373264.1 PREDICTED: lymphoid-specific helicase-like [Diuraphis noxia] diamond 300 85.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Diuraphis Diuraphis noxia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;