RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074408 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30130278 30130278 PRJNA1074408_S_NODE_9372_length_154_cov_1.297297_g9242_i0 PRJNA1074408 9372 154 1.297297 1.99783738 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 45.8 9.04e-4   NR HUY50141.1 2339230 g9242 i0 56.8 6.38961038961039 37 16 72.1 0 4 114 208 244 HUY50141.1 serine hydrolase [Streptosporangiaceae bacterium] diamond 984 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
32848536 32848536 PRJNA1074408_S_NODE_8660_length_160_cov_1.641026_g8530_i0 PRJNA1074408 8660 160 1.641026 2.6256416 Streptomyces sp. NPDC 1931 Bacteria Bacteria 41.6 0.0315   NR WP_393828826.1 3365535 g8530 i0 47.6 0.7875 42 22 78.8 0 5 130 90 131 WP_393828826.1 aminotransferase class V-fold PLP-dependent enzyme [Streptomyces sp. NPDC048337] diamond 126 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC048337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;