RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28551916 28551916 PRJNA1074408_S_NODE_2307_length_301_cov_1.860465_g2177_i0 PRJNA1074408 2307 301 1.860465 5.59999965 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 115 4.46e-30   NR CEP03344.1 37360 g2177 i0 68.4 2.31229235880399 76 24 75.7 0 299 72 115 190 CEP03344.1 hypothetical protein PBRA_003104 [Plasmodiophora brassicae] diamond 696 115 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30415356 30415356 PRJNA1074408_S_NODE_5173_length_203_cov_1.912500_g5043_i0 PRJNA1074408 5173 203 1.9125 3.882375 Plasmodium malariae 5858 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0229   NR XP_028860088.1 5858 g5043 i0 45.5 1.30049261083744 44 22 65 1 163 32 719 760 XP_028860088.1 conserved Plasmodium protein, unknown function [Plasmodium malariae] diamond 264 42.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae
31101430 31101430 PRJNA1074408_S_NODE_1995_length_323_cov_4.475000_g1865_i0 PRJNA1074408 1995 323 4.475 14.45425 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 126 6.56e-32   NR CAI2370183.1 5936 g1865 i0 64.6 12.5479876160991 96 34 89.2 0 321 34 314 409 CAI2370183.1 unnamed protein product [Moneuplotes crassus] diamond 4053 126 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;