RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1074408" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9118628 9118628 PRJNA1074408_S_NODE_6188_length_187_cov_1.000000_g6058_i0 PRJNA1074408 6188 187 1 1.87 Acrasis kona 1008807 Heterolobosea other_Eukaryota 90.9 1.66e-19   NR KAL0487879.1 1008807 g6058 i0 56.5 0.994652406417112 62 27 99.5 0 186 1 387 448 KAL0487879.1 protein disulfide-isomerase [Acrasis kona] diamond 186 90.9 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27257077 27257077 PRJNA1074408_S_NODE_3463_length_248_cov_1.170732_g3333_i0 PRJNA1074408 3463 248 1.170732 2.90341536 Acrasis kona 1008807 Heterolobosea other_Eukaryota 121 4.25e-33   NR KAL0486596.1 1008807 g3333 i0 74.4 0.991935483870968 82 21 99.2 0 2 247 32 113 KAL0486596.1 ribosomal protein L26 [Acrasis kona] diamond 246 121 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
28898901 28898901 PRJNA1074408_S_NODE_9248_length_155_cov_1.285714_g9118_i0 PRJNA1074408 9248 155 1.285714 1.9928567 Acrasis kona 1008807 Heterolobosea other_Eukaryota 90.9 4.7400000000000006e-21   NR KAL0480790.1 1008807 g9118 i0 86.3 1.9741935483871 51 7 98.7 0 153 1 99 149 KAL0480790.1 ribosomal protein L19 [Acrasis kona] diamond 306 90.9 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;