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contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA1074407" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074407 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9116570 9116570 PRJNA1074407_P_NODE_148068_length_232_cov_3.597484_g144230_i0 PRJNA1074407 148068 232 3.597484 8.34616288 Opisthokonta 33154 Chordata Chordata 84 1.03e-16   NR XP_039273955.1 7725 g144230 i0 83.3 14.2370689655172 48 6 62.1 1 61 204 2030 2075 XP_039273955.1 chromodomain-helicase-DNA-binding protein 7-like [Styela clava] diamond 3303 84.3 0.99644128113879 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
10391393 10391393 PRJNA1074407_P_NODE_104449_length_333_cov_1.461538_g100611_i0 PRJNA1074407 104449 333 1.461538 4.86692154 Metazoa 33208 Chordata Chordata 169 1.12e-49   NR NP_001005443.1 8364 g100611 i0 93.8 80.7117117117117 80 5 72.1 0 331 92 230 309 NP_001005443.1 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [Xenopus tropicalis] diamond 26877 169 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
20142717 20142717 PRJNA1074407_P_NODE_128776_length_264_cov_1.544503_g124938_i0 PRJNA1074407 128776 264 1.544503 4.07748792 Pleurodeles waltl 8319 Chordata Chordata 179 2.52e-52   NR KAJ1195343.1 8319 g124938 i0 92 307.465909090909 87 7 98.9 0 263 3 213 299 KAJ1195343.1 hypothetical protein NDU88_004624 [Pleurodeles waltl] diamond 81171 179 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
23141175 23141175 PRJNA1074407_P_NODE_146679_length_240_cov_0.886228_g142841_i0 PRJNA1074407 146679 240 0.886228 2.1269472 Mammalia 40674 Chordata Chordata 110 3.92e-29   NR XP_055180690.1 34880 g142841 i0 67.1 4.4 79 26 98.8 0 2 238 7 85 XP_055180690.1 small nuclear ribonucleoprotein E-like [Nyctereutes procyonoides] diamond 1056 110 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
26963840 26963840 PRJNA1074407_P_NODE_113822_length_304_cov_1.316017_g109984_i0 PRJNA1074407 113822 304 1.316017 4.00069168 Metazoa 33208 Chordata Chordata 156 9.85e-46   NR XP_039265878.1 7725 g109984 i0 74.3 8.88157894736842 101 26 99.7 0 303 1 112 212 XP_039265878.1 elongation factor 1-beta-like [Styela clava] diamond 2700 157 0.993630573248408 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27541457 27541457 PRJNA1074407_P_NODE_127644_length_267_cov_1.242268_g123806_i0 PRJNA1074407 127644 267 1.242268 3.31685556 Monodon monoceros 40151 Chordata Chordata 52.8 9.68e-6   NR TKC47096.1 40151 g123806 i0 88.5 0.831460674157303 26 3 29.2 0 118 195 133 158 TKC47096.1 hypothetical protein EI555_012305 [Monodon monoceros] diamond 222 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
27627766 27627766 PRJNA1074407_P_NODE_133904_length_252_cov_0.921788_g130066_i0 PRJNA1074407 133904 252 0.921788 2.32290576 root 1 Root_unresolved Root_unresolved 48.1 4.26e-4   NR CAK8628284.1 30338 g130066 i0 56.4 8.25 39 16 45.2 1 164 51 199 237 CAK8628284.1 Chymotrypsin-like elastase family member 1 [Bufotes viridis] diamond 2079 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28867447 28867447 PRJNA1074407_P_NODE_108688_length_320_cov_0.923077_g104850_i0 PRJNA1074407 108688 320 0.923077 2.9538464 Phallusia mammillata 59560 Chordata Chordata 43.5 0.0477   NR CAB3263392.1 59560 g104850 i0 33.3 0.534375 57 38 53.4 0 53 223 124 180 CAB3263392.1 la-related protein 7-like [Phallusia mammillata] diamond 171 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
29593300 29593300 PRJNA1074407_P_NODE_62070_length_551_cov_5.665272_g58247_i0 PRJNA1074407 62070 551 5.665272 31.21564872 Branchiostoma belcheri 7741 Chordata Chordata 130 6.95e-35   NR XP_019626026.1 7741 g58247 i0 45.5 1.52994555353902 132 71 71.9 1 72 467 18 148 XP_019626026.1 PREDICTED: epididymal secretory protein E1-like [Branchiostoma belcheri] diamond 843 130 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29711116 29711116 PRJNA1074407_P_NODE_86350_length_403_cov_1.151515_g82514_i0 PRJNA1074407 86350 403 1.151515 4.64060545 Aves 8782 Chordata Chordata 57.4 1.78e-6   NR XP_042681938.1 9002 g82514 i0 31.9 7.08684863523573 119 71 81.1 2 328 2 1964 2082 XP_042681938.1 nipped-B-like protein [Centrocercus urophasianus] diamond 2856 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Centrocercus Centrocercus urophasianus
29719712 29719712 PRJNA1074407_P_NODE_144810_length_241_cov_0.904762_g140972_i0 PRJNA1074407 144810 241 0.904762 2.18047642 Neotoma lepida 56216 Chordata Chordata 90.5 5.4e-19   NR OBS75475.1 56216 g140972 i0 56.3 1.92946058091286 80 34 98.3 1 3 239 233 312 OBS75475.1 hypothetical protein A6R68_14002 [Neotoma lepida] diamond 465 90.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
29964212 29964212 PRJNA1074407_P_NODE_129111_length_263_cov_2.000000_g125273_i0 PRJNA1074407 129111 263 2 5.26 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.5 2.8e-8   NR CBY09016.1 34765 g125273 i0 83.9 16.9277566539924 31 5 35.4 0 182 90 783 813 CBY09016.1 unnamed protein product [Oikopleura dioica] diamond 4452 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
30090363 30090363 PRJNA1074407_P_NODE_98952_length_352_cov_1.311828_g95114_i0 PRJNA1074407 98952 352 1.311828 4.61763456 Metazoa 33208 Chordata Chordata 68.9 6.89e-11   NR NP_001072907.1 8364 g95114 i0 43.5 2.10511363636364 92 41 78.4 1 349 74 28 108 NP_001072907.1 nucleosome assembly protein 1-like 4 [Xenopus tropicalis] diamond 741 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30825666 30825666 PRJNA1074407_P_NODE_55194_length_619_cov_1.813187_g51402_i0 PRJNA1074407 55194 619 1.813187 11.22362753 Egretta garzetta 188379 Chordata Chordata 106 4.409999999999999e-23   NR XP_009633903.1 188379 g51402 i0 73.3 0.983844911147011 101 27 48.9 0 1 303 208 308 XP_009633903.1 early growth response protein 1, partial [Egretta garzetta] diamond 609 106 1 Eukaryota Opisthokonta Metazoa Chordata Aves Pelecaniformes Ardeidae Egretta Egretta garzetta
31164461 31164461 PRJNA1074407_P_NODE_130095_length_261_cov_1.212766_g126257_i0 PRJNA1074407 130095 261 1.212766 3.16531926 Metazoa 33208 Chordata Chordata 85.1 6.28e-18   NR AAH29801.1 10090 g126257 i0 84.8 1.03448275862069 46 7 52.9 0 12 149 1 46 AAH29801.1 Klhl20 protein, partial [Mus musculus] diamond 270 85.5 0.9953216374269 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31354572 31354572 PRJNA1074407_P_NODE_109396_length_317_cov_2.073770_g105558_i0 PRJNA1074407 109396 317 2.07377 6.5738509 Chordata 7711 Chordata Chordata 106 2.6799999999999998e-24   NR XP_023378286.1 132908 g105558 i0 89.1 1.5615141955836 55 6 52.1 0 2 166 444 498 XP_023378286.1 F-box/WD repeat-containing protein 1A isoform X9 [Pteropus vampyrus] diamond 495 106 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus vampyrus
31607539 31607539 PRJNA1074407_P_NODE_103456_length_336_cov_1.733840_g99618_i0 PRJNA1074407 103456 336 1.73384 5.8257024 Metazoa 33208 Chordata Chordata 101 2.58e-25   NR XP_039609960.1 55291 g99618 i0 53.7 9.17857142857143 95 44 84.8 0 1 285 5 99 XP_039609960.1 transmembrane protein 14C [Polypterus senegalus] diamond 3084 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31639030 31639030 PRJNA1074407_P_NODE_142456_length_243_cov_0.894118_g138618_i0 PRJNA1074407 142456 243 0.894118 2.17270674 Chordata 7711 Chordata Chordata 95.5 7.050000000000001e-21   NR XP_026243699.1 9999 g138618 i0 49.4 8.97530864197531 81 41 100 0 1 243 283 363 XP_026243699.1 WD40 repeat-containing protein SMU1 [Urocitellus parryii] diamond 2181 96.3 0.991692627206646 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Urocitellus Urocitellus parryii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;