RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1074407" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074407 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9117970 9117970 PRJNA1074407_P_NODE_69548_length_494_cov_1.622328_g65716_i0 PRJNA1074407 69548 494 1.622328 8.01430032 root 1 Root_unresolved Root_unresolved 83.2 3.42e-16   NR WP_203200704.1 1307 g65716 i0 58.2 6.51012145748988 67 28 40.7 0 332 132 118 184 WP_203200704.1 hypothetical protein, partial [Streptococcus suis] diamond 3216 84 0.990476190476191 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis
27035795 27035795 PRJNA1074407_P_NODE_137222_length_247_cov_3.218391_g133384_i0 PRJNA1074407 137222 247 3.218391 7.94942577 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 41.2 0.0427   NR MBE6810904.1 2485925 g133384 i0 45 0.48582995951417 40 18 48.6 1 127 8 19 54 MBE6810904.1 zinc ribbon domain-containing protein [Oscillospiraceae bacterium] diamond 120 41.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
28204196 28204196 PRJNA1074407_P_NODE_111626_length_310_cov_4.430380_g107788_i0 PRJNA1074407 111626 310 4.43038 13.734178 Veillonella sp. 1926307 Bacteria Bacteria 160 1.28e-48   NR WP_366512514.1 1926307 g107788 i0 73.5 1.9741935483871 102 27 98.7 0 309 4 4 105 WP_366512514.1 hypothetical protein [Veillonella sp.] diamond 612 160 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp.
29941242 29941242 PRJNA1074407_P_NODE_71351_length_482_cov_1.633252_g67519_i0 PRJNA1074407 71351 482 1.633252 7.87227464 Erysipelatoclostridium sp. An173 1965571 Bacteria Bacteria 46.2 0.0262   NR WP_087370850.1 1965571 g67519 i0 26.4 0.871369294605809 140 92 80.9 4 422 33 488 626 WP_087370850.1 discoidin domain-containing protein [Erysipelatoclostridium sp. An173] diamond 420 46.2 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Erysipelatoclostridium sp. An173
31331309 31331309 PRJNA1074407_P_NODE_55196_length_619_cov_1.789377_g51404_i0 PRJNA1074407 55196 619 1.789377 11.07624363 Lactobacillales bacterium 1993866 Bacteria Bacteria 46.2 0.0169   NR MBE6159497.1 1993866 g51404 i0 29.8 0.455573505654281 94 53 39.3 2 386 144 49 142 MBE6159497.1 hypothetical protein [Lactobacillales bacterium] diamond 282 46.2 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales     Lactobacillales bacterium
32690971 32690971 PRJNA1074407_P_NODE_141420_length_244_cov_0.888889_g137582_i0 PRJNA1074407 141420 244 0.888889 2.16888916 Clostridiales bacterium 1898207 Bacteria Bacteria 119 6.79e-30   NR NTV77889.1 1898207 g137582 i0 63 1.99180327868852 81 30 99.6 0 2 244 51 131 NTV77889.1 hypothetical protein [Clostridiales bacterium] diamond 486 119 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;