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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA1074407" and tax_kingdom = "Pseudomonadati"

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tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Pseudomonadati · 31 ✖

bioproject 1

  • PRJNA1074407 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
188405 188405 PRJNA1074407_P_NODE_121341_length_284_cov_1.080569_g117503_i0 PRJNA1074407 121341 284 1.080569 3.06881596 Cupriavidus 106589 Bacteria Bacteria 196 1.08e-61   NR WP_029700394.1 106589 g117503 i0 98.9 0.992957746478873 94 1 99.3 0 282 1 125 218 WP_029700394.1 MULTISPECIES: hypothetical protein [Cupriavidus] diamond 282 196 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus  
2739033 2739033 PRJNA1074407_P_NODE_122043_length_282_cov_1.186603_g118205_i0 PRJNA1074407 122043 282 1.186603 3.34622046 Hyphomicrobiales 356 Bacteria Bacteria 162 2.5e-47   NR WP_261519346.1 515947 g118205 i0 82.8 17.8085106382979 93 16 98.9 0 2 280 167 259 WP_261519346.1 DUF692 domain-containing protein [Chelativorans intermedius] diamond 5022 162 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Chelativorans Chelativorans intermedius
26687544 26687544 PRJNA1074407_P_NODE_90161_length_386_cov_1.597444_g86324_i0 PRJNA1074407 90161 386 1.597444 6.16613384 Hyphomicrobiales bacterium 1909294 Bacteria Bacteria 45.8 0.0134   NR MBN8976055.1 1909294 g86324 i0 30.4 0.613989637305699 79 54 60.6 1 303 70 111 189 MBN8976055.1 outer membrane beta-barrel protein [Hyphomicrobiales bacterium] diamond 237 45.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales     Hyphomicrobiales bacterium
26909256 26909256 PRJNA1074407_P_NODE_124702_length_275_cov_1.128713_g120864_i0 PRJNA1074407 124702 275 1.128713 3.10396075 Luteibaculaceae bacterium 3050382 Bacteria Bacteria 43.1 0.0393   NR MFT5337230.1 3050382 g120864 i0 30.8 0.567272727272727 52 36 56.7 0 177 22 322 373 MFT5337230.1 lipopolysaccharide export system protein LptA [Luteibaculaceae bacterium] diamond 156 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Luteibaculaceae   Luteibaculaceae bacterium
26940765 26940765 PRJNA1074407_P_NODE_136782_length_248_cov_0.868571_g132944_i0 PRJNA1074407 136782 248 0.868571 2.15405608 Myxococcota bacterium 2818507 Bacteria Bacteria 42 0.0279   NR MES2638698.1 2818507 g132944 i0 42 0.604838709677419 50 29 60.5 0 22 171 66 115 MES2638698.1 hypothetical protein [Myxococcota bacterium] diamond 150 42 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27035793 27035793 PRJNA1074407_P_NODE_129242_length_263_cov_1.305263_g125404_i0 PRJNA1074407 129242 263 1.305263 3.43284169 Helicobacter sp. 218 Bacteria Bacteria 43.5 0.0216   NR MDE7317487.1 218 g125404 i0 48.7 0.444866920152091 39 19 43.3 1 165 52 20 58 MDE7317487.1 alpha/beta hydrolase [Helicobacter sp.] diamond 117 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp.
27067361 27067361 PRJNA1074407_P_NODE_72982_length_472_cov_1.428571_g69148_i0 PRJNA1074407 72982 472 1.428571 6.74285512 Halioglobus sp. 2024834 Bacteria Bacteria 45.1 0.0497   NR MFT6337409.1 2024834 g69148 i0 33.3 0.533898305084746 84 52 52.1 2 339 94 252 333 MFT6337409.1 hypothetical protein [Halioglobus sp.] diamond 252 45.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Halioglobus Halioglobus sp.
27731129 27731129 PRJNA1074407_P_NODE_99584_length_350_cov_0.989170_g95746_i0 PRJNA1074407 99584 350 0.98917 3.462095 Cupriavidus 106589 Bacteria Bacteria 138 7.64e-39   NR WP_024569826.1 106589 g95746 i0 98.7 0.66 77 1 66 0 119 349 1 77 WP_024569826.1 MULTISPECIES: helix-turn-helix domain-containing protein [Cupriavidus] diamond 231 138 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus  
27857013 27857013 PRJNA1074407_P_NODE_139005_length_246_cov_0.878613_g135167_i0 PRJNA1074407 139005 246 0.878613 2.16138798 Pedobacter nutrimenti 1241337 Bacteria Bacteria 125 3.16e-31   NR WP_110827936.1 1241337 g135167 i0 100 0.74390243902439 61 0 74.4 0 1 183 968 1028 WP_110827936.1 SusC/RagA family TonB-linked outer membrane protein [Pedobacter nutrimenti] diamond 183 125 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter nutrimenti
28235716 28235716 PRJNA1074407_P_NODE_138186_length_247_cov_0.873563_g134348_i0 PRJNA1074407 138186 247 0.873563 2.15770061 Candidatus Anoxychlamydiales bacterium 2705072 Bacteria Bacteria 42.7 0.0388   NR NGX48595.1 2705072 g134348 i0 38 0.607287449392713 50 31 60.7 0 235 86 123 172 NGX48595.1 hypothetical protein [Candidatus Anoxychlamydiales bacterium] diamond 150 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Candidatus Anoxychlamydiales     Candidatus Anoxychlamydiales bacterium
28290501 28290501 PRJNA1074407_P_NODE_121626_length_283_cov_1.342857_g117788_i0 PRJNA1074407 121626 283 1.342857 3.80028531 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00346   NR MBX5483269.1 2484252 g117788 i0 38.6 2.5017667844523 70 40 71 1 237 37 73 142 MBX5483269.1 efflux RND transporter periplasmic adaptor subunit [Myxococcaceae bacterium] diamond 708 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28393802 28393802 PRJNA1074407_P_NODE_148206_length_228_cov_3.477419_g144368_i0 PRJNA1074407 148206 228 3.477419 7.92851532 Ralstonia thomasii 3058596 Bacteria Bacteria 147 3.22e-40   NR CAJ0873079.1 3058596 g144368 i0 93.4 2 76 5 100 0 228 1 138 213 CAJ0873079.1 hypothetical protein R6138_01897 [Ralstonia thomasii] diamond 456 147 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia thomasii
29057023 29057023 PRJNA1074407_P_NODE_126308_length_271_cov_0.974747_g122470_i0 PRJNA1074407 126308 271 0.974747 2.64156437 Candidatus Chlamydia sanziniae 1806891 Bacteria Bacteria 43.9 0.02   NR WP_066482391.1 1806891 g122470 i0 30.6 0.686346863468635 62 43 68.6 0 12 197 416 477 WP_066482391.1 calcium-binding protein [Candidatus Chlamydia sanziniae] diamond 186 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Candidatus Chlamydia sanziniae
29215022 29215022 PRJNA1074407_P_NODE_127989_length_266_cov_1.523316_g124151_i0 PRJNA1074407 127989 266 1.523316 4.05202056 Holophagales bacterium 2478486 Bacteria Bacteria 145 1.91e-38   NR MCG8462661.1 2478486 g124151 i0 83.5 2.93233082706767 85 14 95.9 0 3 257 99 183 MCG8462661.1 insulinase family protein [Holophagales bacterium] diamond 780 145 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium
29404264 29404264 PRJNA1074407_P_NODE_120649_length_286_cov_0.924883_g116811_i0 PRJNA1074407 120649 286 0.924883 2.64516538 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 132 3.16e-38   NR HXW05813.1 2910147 g116811 i0 95.9 5.38111888111888 73 3 76.6 0 66 284 1 73 HXW05813.1 HU family DNA-binding protein [Vicinamibacterales bacterium] diamond 1539 132 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
29877992 29877992 PRJNA1074407_P_NODE_144111_length_242_cov_0.899408_g140273_i0 PRJNA1074407 144111 242 0.899408 2.17656736 uncultured Porphyromonas sp. 159274 Bacteria Bacteria 174 7.93e-50   NR WP_297125082.1 159274 g140273 i0 98.8 0.991735537190083 80 1 99.2 0 3 242 82 161 WP_297125082.1 hypothetical protein [uncultured Porphyromonas sp.] diamond 240 174 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas uncultured Porphyromonas sp.
29909629 29909629 PRJNA1074407_P_NODE_82791_length_419_cov_2.465318_g78955_i0 PRJNA1074407 82791 419 2.465318 10.32968242 Chitinophaga deserti 2164099 Bacteria Bacteria 46.6 0.00873   NR WP_109700658.1 2164099 g78955 i0 37.1 0.443914081145585 62 37 44.4 1 192 7 212 271 WP_109700658.1 alpha-1,2-fucosyltransferase [Chitinophaga deserti] diamond 186 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga deserti
30004324 30004324 PRJNA1074407_P_NODE_136951_length_248_cov_0.868571_g133113_i0 PRJNA1074407 136951 248 0.868571 2.15405608 Cupriavidus taiwanensis 164546 Bacteria Bacteria 139 3.3e-39   NR WP_116369713.1 164546 g133113 i0 74.4 0.991935483870968 82 21 99.2 0 1 246 92 173 WP_116369713.1 hypothetical protein [Cupriavidus taiwanensis] diamond 246 139 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus taiwanensis
30572698 30572698 PRJNA1074407_P_NODE_140773_length_244_cov_2.959064_g136935_i0 PRJNA1074407 140773 244 2.959064 7.22011616 Gammaproteobacteria bacterium 1913989 Bacteria Bacteria 43.9 0.00659   NR MDD9818740.1 1913989 g136935 i0 41.9 0.528688524590164 43 25 52.9 0 219 91 50 92 MDD9818740.1 hypothetical protein [Gammaproteobacteria bacterium] diamond 129 43.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
30920710 30920710 PRJNA1074407_P_NODE_88874_length_392_cov_0.890282_g85037_i0 PRJNA1074407 88874 392 0.890282 3.48990544 Planctomycetota bacterium 2026780 Bacteria Bacteria 45.1 0.0277   NR MFM1802915.1 2026780 g85037 i0 44.6 0.428571428571429 56 23 36.7 2 194 337 140 195 MFM1802915.1 hypothetical protein [Planctomycetota bacterium] diamond 168 45.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31015272 31015272 PRJNA1074407_P_NODE_125395_length_273_cov_1.270000_g121557_i0 PRJNA1074407 125395 273 1.27 3.4671 Cupriavidus 106589 Bacteria Bacteria 140 1.86e-39   NR WP_024569832.1 106589 g121557 i0 98.6 0.769230769230769 70 1 76.9 0 271 62 151 220 WP_024569832.1 MULTISPECIES: DUF2612 domain-containing protein [Cupriavidus] diamond 210 140 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus  
31078623 31078623 PRJNA1074407_P_NODE_116475_length_297_cov_1.017857_g112637_i0 PRJNA1074407 116475 297 1.017857 3.02303529 Planctomycetota bacterium 2026780 Bacteria Bacteria 99 1.25e-21   NR MDA3962851.1 2026780 g112637 i0 52.6 0.97979797979798 97 37 98 1 296 6 705 792 MDA3962851.1 ATP-dependent chaperone ClpB [Planctomycetota bacterium] diamond 291 99 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31363142 31363142 PRJNA1074407_P_NODE_125536_length_273_cov_1.055000_g121698_i0 PRJNA1074407 125536 273 1.055 2.88015 Xylella fastidiosa 2371 Bacteria Bacteria 43.5 0.00947   NR WP_140189372.1 2371 g121698 i0 50 0.923076923076923 42 20 46.2 1 129 4 68 108 WP_140189372.1 hypothetical protein, partial [Xylella fastidiosa] diamond 252 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa
31363147 31363147 PRJNA1074407_P_NODE_137236_length_247_cov_2.241379_g133398_i0 PRJNA1074407 137236 247 2.241379 5.53620613 uncultured Treponema sp. 162155 Bacteria Bacteria 43.1 0.0262   NR WP_294431056.1 162155 g133398 i0 37 0.65587044534413 54 34 65.6 0 165 4 146 199 WP_294431056.1 DUF6675 family protein [uncultured Treponema sp.] diamond 162 43.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema uncultured Treponema sp.
31647507 31647507 PRJNA1074407_P_NODE_142537_length_243_cov_0.894118_g138699_i0 PRJNA1074407 142537 243 0.894118 2.17270674 Mesorhizobium sp. DCY119 2108445 Bacteria Bacteria 43.5 0.0193   NR WP_119921772.1 2108445 g138699 i0 80 0.617283950617284 25 5 30.9 0 75 1 1 25 WP_119921772.1 hypothetical protein [Mesorhizobium sp. DCY119] diamond 150 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. DCY119
31900709 31900709 PRJNA1074407_P_NODE_116697_length_296_cov_1.363229_g112859_i0 PRJNA1074407 116697 296 1.363229 4.03515784 Candidatus Tritonobacter lacicola 3039765 Bacteria Bacteria 45.8 0.00528   NR MDP8249120.1 3039765 g112859 i0 35.2 0.547297297297297 54 35 54.7 0 278 117 251 304 MDP8249120.1 DUF58 domain-containing protein [Candidatus Tritonobacter lacicola] diamond 162 45.8 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Tritonobacteria Candidatus Tritonobacterales Candidatus Tritonobacteraceae Candidatus Tritonobacter Candidatus Tritonobacter lacicola
31963914 31963914 PRJNA1074407_P_NODE_144038_length_242_cov_0.899408_g140200_i0 PRJNA1074407 144038 242 0.899408 2.17656736 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 62.8 1.27e-10   NR HVG72772.1 2910147 g140200 i0 37.3 0.929752066115702 75 46 91.7 1 231 10 4 78 HVG72772.1 PRC-barrel domain-containing protein [Vicinamibacterales bacterium] diamond 225 62.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32027306 32027306 PRJNA1074407_P_NODE_122398_length_281_cov_1.264423_g118560_i0 PRJNA1074407 122398 281 1.264423 3.55302863 Escherichia coli 562 Bacteria Bacteria 42 0.0135   NR MFK9312080.1 562 g118560 i0 46.3 0.576512455516014 54 27 55.5 1 184 29 14 67 MFK9312080.1 hypothetical protein [Escherichia coli] diamond 162 42 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
32249109 32249109 PRJNA1074407_P_NODE_143558_length_242_cov_0.899408_g139720_i0 PRJNA1074407 143558 242 0.899408 2.17656736 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 102 1.43e-23   NR HXG55980.1 2910147 g139720 i0 65 3.95454545454545 80 28 99.2 0 242 3 210 289 HXG55980.1 hypothetical protein [Vicinamibacterales bacterium] diamond 957 102 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32470493 32470493 PRJNA1074407_P_NODE_97739_length_356_cov_1.530035_g93901_i0 PRJNA1074407 97739 356 1.530035 5.4469246 Cupriavidus metallidurans 119219 Bacteria Bacteria 234 4.23e-77   NR WP_035835132.1 119219 g93901 i0 100 0.960674157303371 114 0 96.1 0 2 343 41 154 WP_035835132.1 HNH endonuclease [Cupriavidus metallidurans] diamond 342 234 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
32682460 32682460 PRJNA1074407_P_NODE_128180_length_266_cov_1.088083_g124342_i0 PRJNA1074407 128180 266 1.088083 2.89430078 root 1 Root_unresolved Root_unresolved 45.4 0.00531   NR WP_267339125.1 670 g124342 i0 95 0.902255639097744 20 1 22.6 0 100 41 59 78 WP_267339125.1 RNA-directed DNA polymerase, partial [Vibrio parahaemolyticus] diamond 240 45.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;